Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1026 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  406 bits (1044), Expect = e-117
 Identities = 303/947 (31%), Positives = 462/947 (48%), Gaps = 79/947 (8%)

Query: 79   DHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDE 138
            D  V V +G  K +    + + +   E+++ PT  V   L GKLPG +  Q + Q G D 
Sbjct: 100  DEVVVVGYGKAKRITLTGAVSGIQAREIRNVPTSSVQNALTGKLPGFFSQQQSGQPGKDA 159

Query: 139  PAISLRG--------RTPLVVIDGVPRSY---LSIDPEQIESISVIKDALGTALYGMKAA 187
                +RG          PL+++D +  +Y     I+  +IESIS++KDA  TA+YG+K A
Sbjct: 160  SDFFIRGVSSLNNDGNKPLIMVDDMQYTYEQLSQINVNEIESISILKDASTTAIYGIKGA 219

Query: 188  DGMLLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQA--IY 245
            +G+L++ T+RG     +I    + G+Q  +  PKFL+A+    L  EA  NDG  +   Y
Sbjct: 220  NGVLVVKTRRGEQGKPKINVRLETGMQTPVRTPKFLNAYESLQLVKEAHTNDGTLSDFPY 279

Query: 246  TAADLDKYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSG 305
            T  D+  +++ T+P+ HP+VNW DEI K  A     N+++ GGS K+RYFV   Y +Q+G
Sbjct: 280  TEDDMIAFRDHTDPYGHPDVNWYDEIFKKMAFQENINVDVSGGSKKLRYFVSAGYFTQNG 339

Query: 306  FLVTDPSINT---YETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQP--GSTIA 360
             LV D   N+      N S++R+++R+N+D D+T++  + L +  R  + N+P   +   
Sbjct: 340  -LVKDFGGNSGDGVNPNYSYRRFNYRTNLDFDVTDNFNMRLDVSSRFMDINEPYNMNVTG 398

Query: 361  SIYSTLLTTPNNAYPKFNENGSLGGNTEFQN---NLYGMSIKSGYRPSVNRNLGADVSLM 417
             +Y      P +A P  N +GS     + Q+    L       GY+ +   +        
Sbjct: 399  ELYDFSKMHPYSA-PLLNPDGSFAYLYDTQDRKPTLNARLANEGYKRTRRNDNNILYGAT 457

Query: 418  QKLDTFLPGLYASGAISFNSYYNEN-----------INRSKSFAVYSPVINPVTNQTSYK 466
             K+D   PGL A   ++++S  +EN            +   +  +Y+   N V +   Y 
Sbjct: 458  WKMDFLTPGLAADFQLAYSS-SDENYRAVMRTRYPTYHYDSATGLYNINPNGVYDYEQYF 516

Query: 467  TIGGDGTQSNSSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIRDSYV--LGGALSQV 524
                    S   +  DLN +   ++   ++   D N      L+ R S       A+   
Sbjct: 517  VY-----NSTDKAIKDLNIKASLKYAHVFNNAHDVN---VMFLYNRQSTTNEKDAAVPNN 568

Query: 525  NQSLGGRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFAN---L 581
             +    +  Y Y NKYL++L  +Y G DR+   + +GFFP++ +G+ I+ E FF N   L
Sbjct: 569  FEGYTMQLGYKYKNKYLVDLNMAYNGTDRFGKDNNFGFFPALAIGYAISQEDFFKNVDWL 628

Query: 582  KNTVNSLKLRTSYGLTATNAAAG-YFQYLQNFDNGD--TFYSRNPLTTSSTKDEGPLANP 638
               V  LK RTSYGL  ++ A+G  + Y Q +  GD  TF   N    S  K EG L N 
Sbjct: 629  GRNVQLLKFRTSYGLVGSDVASGDRYLYRQVYKTGDSYTFGEGNNFGVSGIK-EGDLGNL 687

Query: 639  NITWEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPENIGK 698
            N+TWEKA+KFN+G+D+++  DK  LT D++ +  YD L T R +   ++G  L PEN+ +
Sbjct: 688  NVTWEKARKFNVGVDMNLF-DKFSLTFDWFIDKRYDQLVT-RNDIPDILGIGLSPENVAE 745

Query: 699  NQYSGIELGLGYQNQINNFRYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGY 758
                G +  +GYQ++  NF +       ++ ++V +  E  +K  +   TG+ +GQ FGY
Sbjct: 746  TTNKGFDGQIGYQDRFGNFNFNTNFVFGYAKNRVDYKAEAQQKYEWLRETGRQIGQPFGY 805

Query: 759  VADGFY--NNTAEINNG----PKVDGYLPVPGDLKYKDLNNDGIINTYDMTAIGSTK-PV 811
               G+Y   +  +IN+G    P         GDLKY DLN DG IN +D  AIG    P 
Sbjct: 806  HWIGYYTPEDIEKINSGAADAPAKPDIAVQAGDLKYADLNGDGTINDFDKRAIGKPNLPT 865

Query: 812  FFYGLTGGINYKGLDFSFTLNGKANRNVYFNFINFASTGAAGGYGQALESSLLRWTP--- 868
               G T G ++KG   S    G  + +   N      TG   G  Q       RWT    
Sbjct: 866  TTLGWTIGGSWKGFSISVLFQGSFDYSFAIN-----GTGIESGKSQFQPLHQKRWTQERY 920

Query: 869  ATASQAEYPRLSVGNNPNNSQV---SSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNV 925
                  E+PRL++ +   NS     S FW+ N  Y+RL+ V++GY LP   +    L NV
Sbjct: 921  ENGESIEFPRLTMQDGTINSASAYNSDFWLINAWYIRLKTVDLGYQLPKTALPKF-LDNV 979

Query: 926  RVFANGLNLLTATTLDGV--DPEVLIGNV----PNQRIFNFGVNLQF 966
            R + N  NLLT T  D    DPE+          NQR+ NFGV L F
Sbjct: 980  RFYVNAYNLLTFTGYDKYQQDPEIKTNTAGDAYMNQRVINFGVQLGF 1026