Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1044 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  579 bits (1493), Expect = e-169
 Identities = 342/951 (35%), Positives = 520/951 (54%), Gaps = 57/951 (5%)

Query: 67   NKLRNS-----VALTLPDHDVPVL----FGTQKNVKRIQSSATVSGEELKSFPTPQVGLM 117
            NKLRN      V LT      P +    + T+     + S+ATV  +++ S     +   
Sbjct: 100  NKLRNQERIFKVTLTEEFVKFPDVINGPYDTKDKASYLGSAATVYTDQVSSLMGTTILPS 159

Query: 118  LYGKLPGLYVVQ--------------------NNFQLGSD------EPAISLRGRTPLVV 151
            L G+LPGL +V+                    N+  LG +      E  +  R   P+VV
Sbjct: 160  LQGRLPGLDIVRTRGARKSQIESSSSGTIFNFNSPTLGKEAYSDNTEFNVLSRHNAPVVV 219

Query: 152  IDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLLITTKRGANMPKQITFTSQY 211
            +DGV R   SIDP+ IES+S+ KDAL +   GM+++ G L+ITTK       Q++FT ++
Sbjct: 220  VDGVQRELYSIDPDAIESVSIQKDALSSMFLGMRSSRGALVITTKDPIKQGFQLSFTGRF 279

Query: 212  GIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLDKYKNGTNPFTHPNVNWTDEI 271
            G+Q  +++   L    YA L NEAL NDG+   Y+  D  K+++ ++P+THP+VNW DE+
Sbjct: 280  GVQSSVKKLNPLSTSQYAYLLNEALLNDGKNPFYSYDDFIKFRDHSSPYTHPSVNWCDEL 339

Query: 272  LKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDPSINTYETNNSFKRYSFRSNI 331
            +   +     NLN  GG+   +YF+ + Y+ ++G L  +P  + ++TN +F RY   S +
Sbjct: 340  MNKNSTTQSYNLNATGGNKYAQYFISVGYVGENG-LFKNPGGDAHDTNMTFDRYMISSKV 398

Query: 332  DVDLTNSTTLSLSLFGRIRNSNQPGST---IASIYSTLLTTPNNAYPKFNENGSLGGNTE 388
            ++++T+  T  ++L GRI    QPG T      I S++ +TP+NAYP  N +GS GG+  
Sbjct: 399  NINITDDLTAKVTLMGRIEEGTQPGGTGNGYDDILSSIYSTPSNAYPVTNPDGSWGGSQS 458

Query: 389  FQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGLYASGAISFNSYYNENINRSKS 448
            F NNL   +I SGY     R++   ++L       + GL      S  S       R+K+
Sbjct: 459  FNNNLLSQTINSGYITDGARDVLGAINLRYDFGKLVKGLSVRMVGSVTSQNRSTTKRTKT 518

Query: 449  FAVYSPVINPVTNQTSYKTIGGDGTQSNSSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQL 508
              V+   I+   N   Y   G   TQSNS S     +Q++ +  + Y++   K+ FKA +
Sbjct: 519  SEVFDYTIDKDGNDV-YTRYGEKKTQSNSFSSVSTYRQMYGQLAVDYERQFGKHKFKASV 577

Query: 509  LFIRDSYVLGGALSQVNQSLGGRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGL 568
            L    + +    L +   ++ G  +YDY  +Y  ++A S   Y+RY  G +WG F + GL
Sbjct: 578  LGDTRNTLTNWDLPEYPSNIIGDVSYDYAERYFAQVALSESYYNRYAPGRRWGTFYAFGL 637

Query: 569  GWNIASESFFANLKNTVNSLKLRTSYGLTATNA-AAGYFQYLQNFDNGDTFY---SRNPL 624
            GW+I+ E+F  N +  +N LK+R  YG T      AGY+ Y Q + +G   Y   +    
Sbjct: 638  GWDISKENFMENCE-WLNQLKIRGVYGKTGNGMNNAGYYTYYQTYSSGGDDYRLGTNLGQ 696

Query: 625  TTSSTKDEGPLANPNITWEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNAS 684
            ++ S  ++  LAN   TWEK  K NIG+D+++  +K+ +TADY+ + YYDLLQ R  +  
Sbjct: 697  SSGSFTEKDKLANLYQTWEKGNKLNIGVDIALFNNKLQVTADYFNDKYYDLLQARGKSIE 756

Query: 685  AVIGAVLPPENIGKNQYSGIELGLGYQNQINNFRYFITANGSWSASKVIFNDEPFRKNAY 744
             +IG   P ENI K ++ G E  + YQ+ + +F Y+ +AN S   SKV++ DE  +K  Y
Sbjct: 757  -LIGQNYPDENIAKERWYGGEFSITYQDHVGDFNYYASANWSCEQSKVLYKDE--QKVPY 813

Query: 745  EY--RTGQPVGQTFGYVADGFYNNTAEINNGPKVDGYLPV-PGDLKYKDLNNDGIINTYD 801
            EY   TG+P G  FG VA+GF+ +  EI   P ++G+  + PGD+KYKD NNDG+IN +D
Sbjct: 814  EYLRTTGKPKGAIFGLVAEGFFTSQDEITKSPVIEGFNNIQPGDIKYKDQNNDGVINDFD 873

Query: 802  MTAIGSTKPVFFYGLTGGINYKGLDFSFTLNGKANRNVYFNFINFASTGAAGG--YGQAL 859
               IG  KP+ ++G+  G  ++GL+FS    G  N++V  +  N        G  YGQA 
Sbjct: 874  KVMIGGDKPLSYFGIDLGFEWRGLEFSMFWQGVYNKDVLMSDWNLLEGFQTQGQVYGQAY 933

Query: 860  ESSLLRWTPATASQAEYPRLSVGN---NPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHL 916
            E+ L RWTP TA+ A +PRLS G    N  N   SSFW+++GNY+RL+NV +GY+LP   
Sbjct: 934  ENMLDRWTPETAATATFPRLSAGGNKYNQGNGWGSSFWLRSGNYIRLKNVSLGYNLPDSF 993

Query: 917  IK-LIGLTNVRVFANGLNLLTATTLDGVDPEVLIGNVPNQRIFNFGVNLQF 966
             +  +G   V+VF +G NL T    + VDPEV  GN P QR  + G+N++F
Sbjct: 994  CRNYLGGARVKVFVSGQNLFTKAANELVDPEVSFGNYPLQRCISTGINVKF 1044