Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1033 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  398 bits (1022), Expect = e-114
 Identities = 278/937 (29%), Positives = 466/937 (49%), Gaps = 60/937 (6%)

Query: 81   DVPVL-FGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDEP 139
            DV V+ +G QK    + S   +  +EL    +  +   L G++PGL  VQ + + G D  
Sbjct: 106  DVVVIGYGKQKKNSVVSSINAIGPKELSVSSSRNMTNNLAGQVPGLIAVQRSGEPGYDNA 165

Query: 140  AISLRGRT-------PLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLL 192
               +RG++       PLV++DGVPR    I+ ++IES +++KDA  TA+YG + A+G++L
Sbjct: 166  DFWIRGQSSFKGGTNPLVLVDGVPRQMQDIEADEIESFTLLKDAAATAVYGAEGANGVIL 225

Query: 193  ITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLDK 252
            IT+KRG +   +I+F ++  I +    P F+++     L+NEAL N+G  +I T  ++ K
Sbjct: 226  ITSKRGNSQKPKISFRAEGTILEPTRLPTFMNSVETLNLYNEALNNEGTASIRTDEEIAK 285

Query: 253  YKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDPS 312
            Y  G +   +P+ +W   +L+      R  LN+RGG+ + RYFV   +  ++G  +    
Sbjct: 286  YGPGADRDLYPDTDWLGTMLRNHTYNMRYTLNVRGGTERARYFVSGAFYQENG--IFKDF 343

Query: 313  INTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPNN 372
             N Y+ N   KRY+ RSNID D T +TT+ + L G+   +N PG+  ++I++T+  TP+ 
Sbjct: 344  GNDYDNNIGLKRYNLRSNIDFDATKTTTVKVDLSGQYLQTNYPGTGTSTIFTTMCRTPSY 403

Query: 373  AYPKFNENGSLGGN---TEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGLYA 429
              P    +G++ G+   +  ++N Y + + SGY      ++ + V + QKLD    GL  
Sbjct: 404  IMPAVYSDGTVAGHPRPSGNRSNPYNLLVNSGYAKEWRTSIQSKVEVDQKLDFLTKGLTW 463

Query: 430  SGAISFNSYYNENINRSKSFAVYSPVINPVTNQTSYKTI--GGDGTQSNSSSPTDLNQQI 487
             G ISF++  +    R+K+   Y         +  YKT+  G D    N S+ +  N++I
Sbjct: 464  KGLISFDADMSYIAKRTKTPTQYLATGRDENGKLLYKTVVEGSDVLSENLSNSS--NKKI 521

Query: 488  FSRFDLGYDKTI-DKNTFKAQLLFI-RDSYVLGGALSQVNQSLGGRFNYDYDNKYLLELA 545
            +      Y++T  +K+   A  L++ +++     AL    Q L GR  Y YD +Y LE  
Sbjct: 522  YFETAFNYNRTFAEKHDVGAMFLYMQKETQYHNNALPYRKQGLVGRVTYGYDGRYFLEGN 581

Query: 546  TSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFAN-LKNTVNSLKLRTSYGLTATNAAAG 604
              Y G + +  G ++GFFP++GL W I++E ++   LK  V+ LKLR S G T  +   G
Sbjct: 582  FGYTGSETFAKGYRFGFFPAMGLAWYISNEHYYPEALKKVVSKLKLRFSIGRTGNDDTGG 641

Query: 605  -YFQYLQNFDNGDTFYSRNPLTTSSTK------DEGPLANPNITWEKAKKFNIGLDVSML 657
              F Y       ++ Y+     + +         E    +P ++WE   K N G+D+ + 
Sbjct: 642  NRFLYRGTMKQDNSGYNIGFSNSGALGGVGNGITEAQFESPFLSWEIEDKRNFGIDLGLF 701

Query: 658  KDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPENIGKNQYSGIELGLGYQNQINNF 717
             +++ L  DY+ N   D+L  R T ++      +P +N G  +  G++  L    ++   
Sbjct: 702  DNRIDLQVDYFNNKRKDILLQRNTVSNVTGFQQMPWQNFGIVKNQGVDASLNLNYKVGEV 761

Query: 718  RYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADGFY-----NNTAEINN 772
                  N +++ ++++  D+  +   +  + G  +     Y+ADG Y     N T E  N
Sbjct: 762  NLSARGNFTFARNEILEYDQVPQVYPWLEKKGTRLNSWKLYIADGLYTADDFNITGEGLN 821

Query: 773  -----GPKVDGYLPV---PGDLKYKDLNNDGIINTYD-MTAIGS-TKPVFFYGLTGGINY 822
                  P V   L     PGD+KYKDLN DG I++ D M  +G+ + P   YG      +
Sbjct: 822  RQYELKPGVVSGLSSGVRPGDIKYKDLNGDGKIDSNDQMEDVGNPSVPEIVYGFGLNAEW 881

Query: 823  KGLDFSFTLNGKANRNVYFNFINFASTGAAGGYGQALESSLL------RWTPATASQ-AE 875
            KG        G  N +     +  +S GA   +   +E S +      RWT    SQ   
Sbjct: 882  KGAYVGIFFQGSGNTS---TVLGASSNGAFFPFQWGVEESAVRSEVANRWTEQNPSQNVM 938

Query: 876  YPRLSVGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFANGLNLL 935
            +PR+   N  NN+  S++W++N ++LRL+N+E+GY+     +K IG+  +RV+  G NL 
Sbjct: 939  FPRMHSTNYDNNTAASTWWLRNASFLRLKNIEVGYNFKEKTLKKIGIQALRVYLQGNNLC 998

Query: 936  TATTLDGVDPEVLIGNV------PNQRIFNFGVNLQF 966
                +   DPE  +GN       P  R F FG++  F
Sbjct: 999  VWDDIKMWDPE--LGNTNGGFSYPLSRTFTFGLDFTF 1033