Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1050 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  373 bits (958), Expect = e-107
 Identities = 275/959 (28%), Positives = 453/959 (47%), Gaps = 90/959 (9%)

Query: 79   DHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDE 138
            D  V V +G Q+ V  + + +++  E++K  PT  +   + G+LPG+  VQ + + G D+
Sbjct: 111  DEVVVVAYGHQRKVSVVGAQSSMKIEDIK-MPTANLSSAIAGRLPGVVAVQRSGEPGHDD 169

Query: 139  PAISLRGRT--------PLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGM 190
              + +RG +        PLV++DGV RS+ +IDPE IES +V+KDA  TA+YG++ A+G+
Sbjct: 170  SDLWIRGISTLAGQNSKPLVLVDGVERSFNNIDPEDIESFTVLKDASATAVYGVRGANGV 229

Query: 191  LLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADL 250
            +LI TK G     Q +     G     ++P+  DAF Y    NEA  +     +Y+   +
Sbjct: 230  ILIKTKPGKVGKPQFSVDYYEGFVTLTKKPEMADAFTYMDAANEAYMDTRGSMLYSPQYI 289

Query: 251  DKYKNG-----------TNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLD 299
            +  K              NP+ +PNV+W +E+        R N+++RGG     Y+V L 
Sbjct: 290  EATKKAHGLLPNDNPLMFNPYLYPNVDWMNELFNDWGHNRRVNVSVRGGVPNATYYVSLS 349

Query: 300  YLSQSGFLVTDPSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTI 359
            Y ++ G L     +  Y+ N  + RY++ +N+++  T +TT+ L   G +   N P  + 
Sbjct: 350  YYNEKG-LTRTAEMENYDANIRYDRYNYTANLNLKPTETTTIDLGFNGFLSMGNYPQQST 408

Query: 360  ASIYSTL---------LTTPNNAYPKFNENGSLGGNTEFQNNLYGMSIKSGYRPSVNRNL 410
            + ++++          L  P+ + P  + NG L        N Y    + GY+      L
Sbjct: 409  SDLFASAMEINPVYLPLMMPDGSVPGISTNGDL-------RNPYADLTRRGYKNEARNQL 461

Query: 411  GADVSLMQKLD--TFLPGLYASGAISFNSYYNENINRSKSFAVYS-------------PV 455
             +++ L Q L    +  GL AS  ++F+ + + ++  +K    Y+              V
Sbjct: 462  NSNIRLTQDLGFWKWSKGLTASAMLAFDVHNSRDLKYNKREDTYNFAGTKDENGLWNDDV 521

Query: 456  INPVTNQTSYKTIGGDGTQSNSSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIRDSY 515
             +   N     T  G    +     +D     F    L YD++   +     LL+ +  Y
Sbjct: 522  FDADGNYRYALTYTGHKDLAFDQGASDSRSTYFEA-SLNYDRSFGLHRIGGLLLYNQKIY 580

Query: 516  -----VLGGALSQVNQSLGGRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGW 570
                  L G+L    Q L  R  Y ++++Y  E    Y G + +    ++GFFP+ GLGW
Sbjct: 581  RSSSDNLIGSLPYKQQGLAARATYSWNDRYFFEANLGYNGSENFSPEKRFGFFPAFGLGW 640

Query: 571  NIASESFFANLKNTVNSLKLRTSYGLTATNAAAG-YFQYLQNFDNGDTFY---SRNPLTT 626
             I++E+++ +L+ TV+  K+R + GL  T+A  G  F YL    + D +      N +  
Sbjct: 641  AISNEAWWESLQETVSYFKVRYTDGLVGTDAVTGRRFMYLDQMASVDGYRFGDQNNGVGG 700

Query: 627  SSTKDEGPLANPNITWEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAV 686
                  G     N+ W  ++K ++G+D+   KD + LT D ++    D+  TRR      
Sbjct: 701  WGFSKYG----ANVGWSTSRKQDLGVDLKFFKDNLSLTLDIFKEHRKDIFITRRVIPDYS 756

Query: 687  IGAVLPPENIGKNQYSGIELGLGYQNQINNFRYFITANG--SWSASKVIFNDEPFRKNAY 744
                +P  N+G     G E  L Y  Q+   + F+T  G  SW+  K+I ND+P  +  +
Sbjct: 757  GFVEMPYANLGVVDNKGFEATLEYTQQLGK-KCFLTVRGNFSWNEDKIIENDDPRVQYPW 815

Query: 745  EYRTGQPVGQTFGYVADGFYNNTAEINN-----GPKVDGYLPVPGDLKYKDLNNDGIINT 799
              + G  V   +G++A+G + +  EI +     G    G +   GD+KYKDLN DG+I+ 
Sbjct: 816  MEKRGTNVNGRWGWIAEGLFTSEEEIMDHAKQFGEGHPGQISKVGDIKYKDLNGDGVIDD 875

Query: 800  YDMTAIG-STKPVFFYGLTGGINYKGLDFS----FTLNGKANRNVYFNFINFASTGAAGG 854
            YD   IG    P  +YG   G + +  DFS    F  N KA+R +  N +   + G+  G
Sbjct: 876  YDKCLIGQGDVPKIYYGF--GADLQLGDFSVGALFAGNAKADRCLGGNAMYPFNDGS--G 931

Query: 855  YGQALESSLLRWTP--ATASQAEYPRLSVGN--NPNNSQVSSFWVKNGNYLRLRNVEIGY 910
                  +   RW+    T     YPRL  GN  N NN + S++W K+ ++LRL+ + I Y
Sbjct: 932  ITNLFANITDRWSADNPTNQDVFYPRLHHGNNANQNNMKTSTWWQKDVSFLRLKQLTIAY 991

Query: 911  SLPGHLIKLIGLTNVRVFANGLNLLTATTLDGVDPEVLIGN---VPNQRIFNFGVNLQF 966
             LP  LI    L + R++  G NLLT +     DPE+   N    PN R ++ GVN+ F
Sbjct: 992  QLPKKLINQTFLKSARIYVMGTNLLTFSKFKLWDPELNTNNGTAYPNVRTYSVGVNVSF 1050