Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  384 bits (986), Expect = e-110
 Identities = 260/944 (27%), Positives = 451/944 (47%), Gaps = 63/944 (6%)

Query: 79   DHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDE 138
            D  V V +G Q+ V  + + +T+  +++K  P   +   + G++ G+  VQ + + G DE
Sbjct: 111  DEVVVVGYGNQRKVSVVGAQSTMDVKDIK-MPAASLSSAISGRIAGVVAVQRSGEPGHDE 169

Query: 139  PAISLRG--------RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGM 190
              I +RG         +PLV++DGV RS+ +IDPE IES +V+KDA  TA+YG++ A+G+
Sbjct: 170  SDIWIRGLSSLLGQSSSPLVLVDGVERSFNNIDPEDIESFTVLKDASATAVYGVRGANGV 229

Query: 191  LLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADL 250
            +++ TK G     Q +        +  ++    DA+ Y    NEA  N      Y+AA +
Sbjct: 230  VIVKTKPGKVGKPQFSVDYYESFTRLTKKVDMADAYTYMDARNEAQMNTSGTLKYSAAYI 289

Query: 251  DKYKNGT-----------NPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLD 299
            +  K              NP+ +P ++W D +        R N+N+RGG     Y+  L 
Sbjct: 290  EATKKANGLLPNDNPRLYNPYLYPAIDWADNLFNDWGHNRRGNINIRGGVPNANYYASLS 349

Query: 300  YLSQSGFLVTDPSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTI 359
            Y  ++G +  +  +  Y T   + RY+F SN+++  T+ TT+ L   G +   + P S+ 
Sbjct: 350  YYGETG-MTRNFKLENYNTQMKYDRYNFTSNLNLKPTSKTTVDLGFSGYLGQGHYPQSST 408

Query: 360  ASIYSTLLTTPNNAYPKFNENGSLGG-NTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQ 418
            +S+Y+  +      YP    NG++ G N++ + N YG+  + GY    +  L +++ + Q
Sbjct: 409  SSLYAACMDVNPVIYPLLLPNGTVSGINSQQKFNPYGLLARGGYYDEFSSQLNSNIRVKQ 468

Query: 419  KLD--TFLPGLYASGAISFNSYYNENINRSKSFAVYS--------------PVINPVTNQ 462
             LD   +  GL AS  ++F++Y +     +++  +Y+               + +  T  
Sbjct: 469  DLDFWKWSKGLSASAMVAFDTYNSRKRKYNRNEPMYTFAGKTDENGIWIEDTLFDEETGD 528

Query: 463  TSYKTI-GGDGTQSNSSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIRDSY------ 515
              Y  +   DG+ S  +     ++ +++   L YD++   +     LL+ +  Y      
Sbjct: 529  YLYSVLKEADGSLSLQTPEQWSSRTVYTEASLNYDRSFGAHRVGGLLLYNQKVYWDLNAT 588

Query: 516  -VLGGALSQVNQSLGGRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIAS 574
             V+GG +    +   GR  Y ++++Y  E      G + +  G ++G FP+ GLGW +++
Sbjct: 589  DVIGG-MPYKQRGFAGRATYSWNDRYFAEFNLGINGSENFSPGKRYGVFPAFGLGWAVSN 647

Query: 575  ESFFANLKNTVNSLKLRTSYGLTATNAAAGYFQYLQNFDNG--DTFYSRNPLTTSSTKDE 632
            ESF+  ++  ++ LK R + G   ++ A G     Q    G   T +  N  + +   +E
Sbjct: 648  ESFWNPVRKYISFLKFRYTDGWVGSDTATGRRFMYQGVFTGLTGTMFGTNYTSANGYGEE 707

Query: 633  GPLANPNITWEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLP 692
                  N+TW K++K ++G+D+  L D +    D+++    ++   R T  S       P
Sbjct: 708  --KYGVNVTWSKSRKQDLGIDIKFLNDNLSFVVDFFKERRDNIFLQRSTIPSYAGWIENP 765

Query: 693  PENIGKNQYSGIELGLGYQNQINNFRYFITANG--SWSASKVIFNDEPFRKNAYEYRTGQ 750
              N+G  +  GIEL + Y  ++   + F+T  G  +++  K+I NDEP     +    G 
Sbjct: 766  YANLGVVENKGIELAMDYTQRLGK-KTFLTVRGNLTFNKDKIIENDEPPVDYPWMETRGT 824

Query: 751  PVGQTFGYVADGFYNNTAEINNGPKVDGYLPVPGDLKYKDLNNDGIINTYDMTAIG-STK 809
             V  T+G++ADG + + AEI +     G + V GD+KY+DLN DG+I+ YD T IG    
Sbjct: 825  NVNATWGFIADGLFTSQAEIEDHATQFGTVHV-GDIKYRDLNGDGVIDNYDKTVIGRGDV 883

Query: 810  PVFFYGLTGGINYKGLDFSFTLNGKANRNVYFNFINFASTGAAGGYGQALESSLLRWTP- 868
            P  +YG    +       S    G    + Y + I         G      +   RW+P 
Sbjct: 884  PRIYYGFGADLQIGDFSISALFQGTGQADRYLDGICIKPFWDDEGRDNVFANIHDRWSPD 943

Query: 869  -ATASQAEYPRLSVGN--NPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNV 925
              T     YPR+ VG+  N NN Q SS+WVK+ ++LRL+ + I Y++P  L+    L + 
Sbjct: 944  DPTNQDVFYPRMYVGSDANTNNVQKSSWWVKDVSFLRLKQLNISYNIPKKLLDRCFLKSA 1003

Query: 926  RVFANGLNLLTATTLDGVDPEVLIGN---VPNQRIFNFGVNLQF 966
             V+  G NLLT +     DPE+   N    PN   ++ GV   F
Sbjct: 1004 SVYLMGTNLLTFSNFKLWDPELNTSNGTAYPNVSSYSVGVKFSF 1047