Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1051 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  406 bits (1043), Expect = e-117
 Identities = 302/977 (30%), Positives = 458/977 (46%), Gaps = 92/977 (9%)

Query: 60   NLRDSLRNKLRNSVALTLPDHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLY 119
            N R ++   L+  VA    D  V V +GTQK      S ATVS +++       +   L 
Sbjct: 97   NGRSTINIILKEDVANL--DEVVVVGYGTQKKAHLTGSVATVSQKDMLKTTASNMSQTLV 154

Query: 120  GKLPGLYVVQNNFQLGSDEPAISLRGR-------TPLVVIDGVPRSYLSIDPEQIESISV 172
            GKLPGL   Q+  Q GSD+ +I +RG        T LV++DGV R+   +DP  +ES+++
Sbjct: 155  GKLPGLITQQSLGQPGSDDVSILIRGYSSFSGSGTVLVLVDGVERAMGQVDPNDVESVTI 214

Query: 173  IKDALGTALYGMKAADGMLLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLF 232
            +KDA   A+YGMKAA+G++L+TTK G      IT+     +      PK ++   Y   +
Sbjct: 215  LKDAASCAVYGMKAANGVVLVTTKHGQEGKTDITYRGSMTLSHATTLPKMMNGTQYMQWY 274

Query: 233  NEA--LANDG-RQAIYTAADLDKYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGS 289
            N A  L N+G     +T  ++    NG       N +WT ++ K T  + + NL++ GGS
Sbjct: 275  NLARKLDNNGVDNPYFTDEEIAATYNGDPTDGFENTDWTSDLYKTTL-MHQHNLSINGGS 333

Query: 290  NKVRYFVDLDYLSQSGFLVTDPSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRI 349
            NKVRYF+   YL Q G +            N  +R +FRSNIDV  T    +SL+    I
Sbjct: 334  NKVRYFISGGYLHQDGII----------KGNKNERSNFRSNIDVQATKDIKVSLNTAALI 383

Query: 350  RNSNQPG------STIASIYSTLLTT------PNNAYPKFNENGSLGGNTEFQNNLYGMS 397
            ++  QPG          SI+  LL +          YP      +  G T   N +YG S
Sbjct: 384  KDYYQPGGYSYGNQQAYSIFHQLLYSIPFVPKEYEGYP----TSAYRGATSAANPIYG-S 438

Query: 398  IKSGYRPSVNRNLGADVSLMQKLDTFLPGLYASGAISFNSYYNENINRSKSFAVYSPVIN 457
              SG++ S    + +  + ++    FL GL A+  IS++  + +  +++ ++A      +
Sbjct: 439  ANSGFQESRRVRIESSAN-VEYTAPFLKGLKANMFISWD--WQDLASKTFAYAYSVNAYD 495

Query: 458  PVTNQTSYKTIGGDGTQSNSSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLF----IRD 513
              T   SY          N       +QQ+  R  + Y+     +   A  L+    ++ 
Sbjct: 496  SSTKSYSYVQSANLLADGNLYQGDQKSQQVILRPTISYNNKFGLHDVGALFLYEQTQVKS 555

Query: 514  SYV----------------LGGALSQVNQSLG---------GRFNYDYDNKYLLELATSY 548
            S +                LG A +  N             GR NY Y NKYL E +  Y
Sbjct: 556  SALNASRTDYDLFDLPEISLGDAQTATNSGSSGKSAYAAYVGRLNYAYANKYLAEASFRY 615

Query: 549  MGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRTSYG-LTATNAAAGYFQ 607
             G  ++  G +WGFFPSV LGW ++ E FF +    ++  KLR S+G L + N +A  ++
Sbjct: 616  DGSYKFAKGHRWGFFPSVSLGWVMSEEDFFKDALPKIDYFKLRGSFGILGSDNVSAFLYR 675

Query: 608  YLQNFDNGDTFYSRNPLTTSSTKDEGPLANPNITWEKAKKFNIGLDVSMLKDKVWLTADY 667
               ++ N    +   P T  +  +     N  +TWEK K +N+G D+S     + +  D 
Sbjct: 676  KSYSYTNNGVVFGSTPNTQGTLSNTVAYPNERLTWEKTKSYNLGFDLSAWNGLLGVEFDV 735

Query: 668  YRNSYYDLLQTRRTNASAVIGAVLP-PENIGKNQYSGIELGLGYQNQINNFRYFITANGS 726
            +    YD+LQ+        +G   P  EN G     G E+ L ++N+I  F Y +  N S
Sbjct: 736  FYKYTYDILQSVSNIYPPSLGGHYPSSENTGTFDNRGFEIALKHRNRIGEFSYSLNGNLS 795

Query: 727  WSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADGFYNNTAEINNGPKVDGYLPVPGDL 786
            ++ ++++   +      ++   G  VG+ +G  A G Y +  EI N P+V    P  GD+
Sbjct: 796  YAHNRILSRTQADNTLPWQSVLGSSVGELWGLKALGLYQSEEEIANSPQVSWNTPRVGDI 855

Query: 787  KYKDLNNDGIINTYDMTAIG-STKPVFFYGLTGGINYKGLDFSFTLNGKANRNVYFNFIN 845
            KY D+N DG I++ D   I    +P   + L    NYKG D S    G A  +    +  
Sbjct: 856  KYADINGDGKIDSNDRIKISRGIRPEMMFALMADANYKGFDLSVQFQGAALCDKMLQYSW 915

Query: 846  FASTGA-----------AGGYGQALESSLLRWTPATASQAEYPRLSVG--NNPNNSQVSS 892
                GA           A      L      W P   + AEYPRL+V   ++ NN+Q S 
Sbjct: 916  QDLNGATDMTPMTRPWYANWDNAPLYLVENSWRP-DHTNAEYPRLTVSSVSHSNNAQQSD 974

Query: 893  FWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFANGLNLLTATTLDGVDPE---VLI 949
            FW +NG YLRL+NV +GY+LP      +GL+N+RV+ANG NLLT T    +DPE   V  
Sbjct: 975  FWKRNGAYLRLKNVTLGYTLPKAWTNKMGLSNIRVYANGTNLLTFTDFKYIDPESTNVAT 1034

Query: 950  GNVPNQRIFNFGVNLQF 966
            G  P QR F+FG++++F
Sbjct: 1035 GYYPQQRTFSFGIDVRF 1051