Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1151 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  377 bits (967), Expect = e-108
 Identities = 265/953 (27%), Positives = 451/953 (47%), Gaps = 80/953 (8%)

Query: 79   DHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDE 138
            +  V V +GTQ+ +  I + +++  E++K+ P+  +   L G+L G+  VQ   + G D 
Sbjct: 214  EETVIVGYGTQRKISNIGAQSSMKLEDIKT-PSASLTTTLAGRLAGVVAVQRTGEPGKDA 272

Query: 139  PAISLRG------RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLL 192
              I +RG       TPL+++DGV R++  IDPE IES++ +KDA  TA+YG++ A+G+++
Sbjct: 273  ADIWIRGIATPNTATPLILVDGVERAFNDIDPEDIESLTTLKDASATAVYGVRGANGVII 332

Query: 193  ITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLDK 252
            I TK G      I+        +  +     D  +Y    NEAL NDG    +T + +  
Sbjct: 333  IKTKPGKIGKPTISADYYESFTRFTKMVDLTDGVSYMKAANEALRNDGLATKFTDSQIQN 392

Query: 253  YKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDPS 312
               G + + +PNV+W +EI        R N+N+RGGS KV Y+  + Y +++G  VTD S
Sbjct: 393  TILGKDQYLYPNVDWLNEIFNDWGHNRRVNVNVRGGSEKVSYYASVSYFNETGMTVTDKS 452

Query: 313  INTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPNN 372
            INT+++   + RY+F +N+ +D+T +T + +   G +   N P  +   +Y+  ++    
Sbjct: 453  INTFDSKMKYSRYNFTTNLSIDVTPTTKVEIGAQGYLGEGNYPAISSKDLYNAAMSISPV 512

Query: 373  AYPK-FNENGSL-----GGNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPG 426
             YPK F  NG         N  F NN Y  + + GY       + +++ + Q LD    G
Sbjct: 513  EYPKMFFINGEAYIPGRSTNNNF-NNPYSQATRRGYDNLTKNQIYSNLRITQDLDMLTKG 571

Query: 427  LYASGAISFNSYYNENINRSKSFAVY-------------SPVINPV---TNQTSYKTIGG 470
            L  +   +F+ Y   ++++ ++ + Y              P++  +   TN  SYK    
Sbjct: 572  LKLTAMYAFDVYNEIHVHQDRAESTYYFLDTNVPYDLDGQPILQRIYTGTNVLSYK---- 627

Query: 471  DGTQSNSSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIRDSYV------LGGALSQV 524
                      T  N++ +    L YD+    +      LF +   +      L  A+   
Sbjct: 628  --------QETSGNKKTYLEASLNYDRAFGDHRVSGLFLFNQQQKLLYPKGTLEDAIPYR 679

Query: 525  NQSLGGRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNT 584
               + GR  Y + ++Y  E    Y G + +   +++G FP+ G+GW I++E F+  L   
Sbjct: 680  MMGIAGRATYSWKDRYFAEFNIGYNGAENFSPKNRYGTFPAYGVGWVISNEKFWEPLSKV 739

Query: 585  VNSLKLRTSYGLTA-TNAAAGYFQYL-QNFDNGDTFYSRNPLTTSSTKDEGPLANPNITW 642
            V+ LK+R + G    ++ +   F YL Q  +NGD  Y   P  T  +  E      ++ W
Sbjct: 740  VSFLKIRYTDGKVGNSDVSDRRFMYLNQMKENGDYGYKLGPNGTKYSGYETLNMAVDLIW 799

Query: 643  EKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIG--AVLPPENIGKNQ 700
            E+A+K ++G+D+ +  D + +  D ++    ++L  R  +  + +G     P  NIG  +
Sbjct: 800  EEARKQDLGIDLKLFNDDLSIIFDIFKERRENILLKRENSIPSFLGYNTSAPYGNIGIVE 859

Query: 701  YSGIELGLGYQNQIN-NFRYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYV 759
              G +  + Y  + N ++   I  N +++  K I  + P ++  +  + GQ +    GY+
Sbjct: 860  NKGFDATVEYNKRFNKDWTLAIRGNITYNKDKWIEGELPEQRYDWMNQYGQNILGKKGYI 919

Query: 760  ADGFYNNTAEINNGPKVDGY-------LPVP----------GDLKYKDLNNDGIINTYDM 802
            A+G +   AEI++  + +          P P          GD+KYKDLNNDG I+ YD 
Sbjct: 920  AEGLFTQ-AEIDDMARWESLSQANKATTPKPFASQFGTVKAGDIKYKDLNNDGQIDAYDK 978

Query: 803  TAI-GSTKPVFFYGLTGGINYKGLDFSFTLNGKANRNVYFNFINFASTGAAGGYGQALES 861
            T I     P   YG    + +K L       G  +     +  +       GG G    +
Sbjct: 979  TYICRGDVPTMVYGFGFTLGWKNLSLGMMFQGTHDAERIMSGSSIQPFNGGGGSGNLYSN 1038

Query: 862  SLLRWTPATASQ-AEYPRLSVG----NNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHL 916
               RWT    +Q A YPRLS G    +N NN Q S++WV++ ++LRL+ ++I Y+LP   
Sbjct: 1039 IDDRWTEDNPNQNAFYPRLSYGAETSSNINNFQPSTWWVRDFSFLRLKTMQISYNLPKDW 1098

Query: 917  IKLIGLTNVRVFANGLNLLTATTLDGVDPEVLIGN---VPNQRIFNFGVNLQF 966
            +  + L N  V+  G NL T +     DPE+   N    PN   ++ GVN  F
Sbjct: 1099 VNKVRLKNAAVYVMGTNLFTLSKFKLWDPELNTDNGASYPNTTSYSVGVNFTF 1151