Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1040 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  406 bits (1043), Expect = e-117
 Identities = 283/937 (30%), Positives = 452/937 (48%), Gaps = 71/937 (7%)

Query: 68   KLRNSVALTLPDHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYV 127
            K++ S A  L D  V    G QK +    +   V+  +LK FPT  +   L G +PG+  
Sbjct: 94   KMKESEASVL-DEVVVTGMGAQKKLTVTGAVTNVNVGDLKRFPTSNMSNALAGNVPGIIA 152

Query: 128  VQNNFQLGSDEPAISLRG-------RTPLVVIDGVPRSYLS-IDPEQIESISVIKDALGT 179
             Q + Q G       +RG        +  +++DG  RS L  ++ E IES +V+KDA  T
Sbjct: 153  RQTSGQPGKSTSEFWIRGISTFGASSSAYILVDGFERSSLDELNIEDIESFTVLKDASAT 212

Query: 180  ALYGMKAADGMLLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALAND 239
            A+YG K A+G++LITTKRG      I    +     +   P+F+D  +YA+L NEAL   
Sbjct: 213  AIYGSKGANGVVLITTKRGKAGKINIDAKVETSYNTRTITPEFVDGLSYASLMNEALVTR 272

Query: 240  GRQAIYTAADLDKYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLD 299
                 Y   +L+ ++   +P  +PNV+W D ILK  A   R NLN+ GG N  RYFV   
Sbjct: 273  NLGMAYQPEELELFRTQMDPDFYPNVDWMDLILKNGAWSYRANLNMNGGGNTARYFVSAS 332

Query: 300  YLSQSGFLVTDPSI-NTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGST 358
            Y    G   TD ++ + Y+TN ++K++++R N+D+D+T ST L L + G +   N PG  
Sbjct: 333  YTEDQGMYNTDQTLRDDYDTNANYKKWNYRMNVDIDITKSTLLKLGIAGSLAKRNSPGLA 392

Query: 359  IASIYSTLLTTPNN-AYPKFNENG----SLGGNTEFQNNLYGMSIKSGYRPSVNRNLGAD 413
               +   +L   N  A P +  NG    S   N   + N +  S ++GY      N+  +
Sbjct: 393  DNEMLWGMLFGYNPIATPVYYSNGYAPISHRDNVN-KLNPWVASTQTGYNEDWQNNVQTN 451

Query: 414  VSLMQKLDTFLPGLYASGAISFNSYYNENINRSKSFAVYSPV-INPVTNQTSYKTIGG-- 470
            V+L Q  D    GL   G   +++  +  INR +   +Y        T +  Y+ +    
Sbjct: 452  VTLEQNFDFITKGLKFVGRFGYDTDNSNWINRHRQPDLYKANGRRQETGEIIYEKMFSAY 511

Query: 471  DGTQSNSSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIRDSYV--------LGGALS 522
            D TQS+ SS     ++ F    L +++    +       + +DS          +   +S
Sbjct: 512  DMTQSSGSSG---KRREFLDLLLSWERAFGNHHGGVTFRYTQDSEKRTVDIGTDIKNGVS 568

Query: 523  QVNQSLGGRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLK 582
            + NQ L GRF Y+++ +Y ++    Y G + +  G+Q+GFFP+  L WN+A ESF  N  
Sbjct: 569  KRNQGLAGRFTYNWNYRYFVDFNFGYTGSENFAPGNQFGFFPAFSLAWNVAEESFVKNNL 628

Query: 583  NTVNSLKLRTSYGLTA--------------TNAAAGYFQ-----YLQNFDNGDTFYSRNP 623
              +N  K+R S+G                 T A  GY       Y+ N+  GD  Y ++ 
Sbjct: 629  KWMNMFKIRYSHGKVGNDNIGDNNRFPYLYTIATTGYNSEGKPNYVYNWGFGD--YGKSF 686

Query: 624  LTTSSTKDEGPLANPNITWEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNA 683
            + T  T+    +A+  ITWE A K ++G+D+S+  DK   T DY+      +  TR    
Sbjct: 687  IGTHYTQ----MASNGITWEVATKDDLGIDLSLFNDKFTATVDYFHEKRTGIFLTREFLP 742

Query: 684  SAVIGAVLPPENIGKNQYSGIELGLGYQNQINNFRYFITANGSWSASKVIFNDEPFRKNA 743
                    P  N+G+ +  G +     + ++      I  N ++S ++V+  DE  +  +
Sbjct: 743  DITGLESKPKANVGEVKSQGFDGNFALKQKLGEVDMTIRGNITYSKNEVLEKDEENQVYS 802

Query: 744  YEYRTGQPVGQTFGYVADGFYNNTAEINNGPKVDGYLPVPGDLKYKDLNNDGIINTYDMT 803
            Y Y+ G  V Q  G +A+G + +  +I   PK +     PGD+KYKD+N DG++N  D  
Sbjct: 803  YLYQKGYRVDQVKGLIAEGLFADYDDIRTSPKQEFGTVQPGDIKYKDVNGDGVVNDNDKV 862

Query: 804  AIGSTK-PVFFYGLTGGINYKGLDFS--FTLNGKANRNVYFNFINFASTGAAGGYGQALE 860
            AIG+T  P   YG+     +KG+D +  F   GK+   +Y   +   S    G   + + 
Sbjct: 863  AIGATTTPNLVYGIGASFAWKGIDVNVHFQGAGKSTFPIYGKCVYAFSESDWGNIFKDMI 922

Query: 861  SSLLRWTPATAS-----------QAEYPRLSVGNNPNNSQVSSFWVKNGNYLRLRNVEIG 909
            S   RW  +  +            A YPRL+ G N NN Q S++W+++G Y+RL+N++IG
Sbjct: 923  SD--RWVDSETAAKLGLHANENPNATYPRLTYGENKNNQQTSTYWMRDGRYIRLKNLDIG 980

Query: 910  YSLPGHLIKLIGLTNVRVFANGLNLLTATTLDGVDPE 946
            Y+LP  ++  +   N+R++  G NL+T +     DPE
Sbjct: 981  YTLPKSIVNKLHFNNIRIYIAGSNLITWSKFKTWDPE 1017