Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1039 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  426 bits (1095), Expect = e-123
 Identities = 284/907 (31%), Positives = 446/907 (49%), Gaps = 48/907 (5%)

Query: 87   GTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDEP----AIS 142
            G QK +    +   V  + LK+ P+  +   L G +PG+  +Q + + GS        IS
Sbjct: 113  GAQKKLTVTGAITNVDVDVLKANPSGSMANALAGNVPGILAMQTSGKPGSVSEFWIRGIS 172

Query: 143  LRG--RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLLITTKRGAN 200
              G   + LV++DG  RS   I+ E +ES SV+KDA  TA+YG K A+G++LITTK G  
Sbjct: 173  TFGASNSALVLVDGFERSLDEINVEDVESFSVLKDASATAIYGSKGANGVVLITTKHGKA 232

Query: 201  MPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLDKYKNGTNPF 260
                I+  ++       + P F+D + YA++ NEA      + +Y A +L+ ++ G +P 
Sbjct: 233  GKINISAKAETFYNMLTQVPDFVDGYTYASMANEAKITRNLEPLYKADELEIFRLGLDPD 292

Query: 261  THPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDPSINTYETNN 320
             +PNVNW DE+L+  +  +R  L++ GG N  RY+V   YL Q G    D ++  Y TN 
Sbjct: 293  LYPNVNWIDELLRKGSWSTRATLSMNGGGNTARYYVSGSYLDQQGMYKVDKALKDYNTNA 352

Query: 321  SFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPNNAYPKFNEN 380
            +F+R+++R N+D+D+T ST L + + G ++ +N  G    +I++ L+       PK   N
Sbjct: 353  NFRRWNYRMNVDIDITKSTLLKVGVSGSLQKANDSGVGSDAIWTALMGYNAIMVPKLYSN 412

Query: 381  G---SLGGNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGLYASGAISFNS 437
            G   + G +   + N +  +  +GYR +   N+  +V+L QKLD    GL   G   +++
Sbjct: 413  GYVPAYGNDNGDRFNPWVQATMTGYRENWKNNIQTNVTLEQKLDFITKGLRFVGRFGYDT 472

Query: 438  YYNENINRSKSFAVYSPVINPVTNQT-SYKTIGGDGTQSNSSSPTDLNQQIFSRFDLGYD 496
              N  INR K    +       T+ T  Y  +  +      S    L  + F   +L Y 
Sbjct: 473  ENNNWINRRKWPEQWKAKRFRATDGTLDYDRVAEERKMFQESGSDGLRNEFFEA-ELHYS 531

Query: 497  KTIDKNTFKAQLLFIRDSYV----LGGALSQ----VNQSLGGRFNYDYDNKYLLELATSY 548
            +    +     L + + S +    LG  L Q     NQ L GRF Y+++ +Y ++    Y
Sbjct: 532  RGFKHHHLGGTLKYNQSSKIKTVGLGDDLKQGIARRNQGLAGRFTYNWNYRYFIDFNFGY 591

Query: 549  MGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRTSYGLTAT-NAAAGYFQ 607
             G + + AG ++GFFP++   WNIA ES        +N  K+R SYG     N     F 
Sbjct: 592  TGSENFAAGHRFGFFPAISGAWNIAEESLIKKHLKWMNMFKIRYSYGKVGNDNLGNTRFP 651

Query: 608  YLQNFD-----NGDTFYSRNPLTTSS-TKDE-------GPLANPNITWEKAKKFNIGLDV 654
            YL + +     +GD             T D          L++PN+TWE A K ++G+D 
Sbjct: 652  YLYDIETMTKKDGDKTVDTGGYNFGDYTFDRYYGGMRYSSLSSPNVTWEIATKHDLGIDF 711

Query: 655  SMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPENIGKNQYSGIELGLGYQNQI 714
            S   DK+  + DY+      +   R      V     P  N+GK    G +    ++ ++
Sbjct: 712  SFFNDKLSGSVDYFNEKREGIYMLREYLPGIVGLESNPSANVGKVTSEGFDGHFTFRQKL 771

Query: 715  NNFRYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADGFYNNTAEINNGP 774
                  I +N ++S ++++  DE      Y+ + G  V Q  G ++ G + +  +I N P
Sbjct: 772  GAVGLTIRSNITYSKNEIVDRDEENNYYWYKMQKGHRVNQARGLISLGLFKDYDDIRNSP 831

Query: 775  --KVDGYLPVPGDLKYKDLNNDGIINTYDMTAIG-STKPVFFYGLTGGINYKGLDFSFTL 831
                DGY  +PGD+KYKD+N DG I+  D  AIG +TKP   YG     N+KGLD +   
Sbjct: 832  VQDFDGYKVMPGDIKYKDVNGDGKIDGNDQVAIGATTKPNLIYGFGIAANWKGLDVNLHF 891

Query: 832  NGKANRNVYF---NFINFASTGAAGGYGQALESSLLRWTPATAS--------QAEYPRLS 880
             G A ++ YF   + ++    G   G   +  ++  RW  A  S         AEYPRLS
Sbjct: 892  QG-AGKSTYFIDGSTVHMFKLGDGWGNVLSEMANSNRWISADISGDPATENPNAEYPRLS 950

Query: 881  VGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFANGLNLLTATTL 940
             G N NN Q S++W++NG+YLRL+ VE+GY+LP  L+  +    VR+F  G NLLT +  
Sbjct: 951  YGPNSNNYQQSTYWLRNGSYLRLKTVEVGYTLPTQLVNKVHFNTVRIFFVGTNLLTWSAF 1010

Query: 941  DGVDPEV 947
               DPE+
Sbjct: 1011 KLWDPEM 1017