Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1027 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  399 bits (1026), Expect = e-115
 Identities = 276/923 (29%), Positives = 444/923 (48%), Gaps = 72/923 (7%)

Query: 76   TLPDHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLG 135
            T+ D  V    G QK V    +  TV   +L++ PT  +   L G + G+   Q + Q G
Sbjct: 104  TVIDEVVVTGTGAQKKVTVTGAVTTVDVSQLRT-PTASITNALAGNVAGILARQTSGQPG 162

Query: 136  SDEPAISLRG-------RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAAD 188
            S+     +RG        + LV++DG  R    I+ E I+  SV+KDA  TA+YG + A+
Sbjct: 163  SNISEFWIRGISTFGAGGSALVLVDGFERDMNEINVEDIQDFSVLKDASATAIYGSRGAN 222

Query: 189  GMLLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAA 248
            G++LITTKRG     ++    +     +   P+F+D   YA + NEAL +  +   Y+ +
Sbjct: 223  GVVLITTKRGKEGKTRVNAKVETSYNTRTRTPEFVDGPTYARMMNEALVSRSQAPAYSES 282

Query: 249  DLDKYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLV 308
            DL+ + NG +    PNV+W + ILK  AP  R  ++L GG    RYF+   Y+++ G   
Sbjct: 283  DLELFANGLDQDLFPNVDWMNLILKDGAPTYRATVDLTGGGTVARYFISASYVNEGGMYE 342

Query: 309  TDPSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLT 368
            TD ++  Y TN ++ R+++R N+D+DLT ST L + + G +   N PGS    I+ +L+ 
Sbjct: 343  TDRAMTDYNTNANYHRWNYRMNVDIDLTKSTLLKVGVSGSLDKQNLPGSQYHEIWHSLMG 402

Query: 369  TPNNAYP-KFNENGSLGGNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGL 427
                A P ++++       +E + N + ++ + GY+ +    +   V+L Q L     GL
Sbjct: 403  YSPIASPVQYSDGKWAAVGSEGRRNPWVLTTQQGYQETWKNKIQTTVNLEQDLKFITKGL 462

Query: 428  YASGAISFNSYYNENINRSKSFAVYSPVINPVTN-QTSYKTIGG----DGTQSNSSSPTD 482
               G   F++Y +   NR K    +       ++ +  ++ I      DGT  +S     
Sbjct: 463  KFYGRFGFDTYTDNGDNRFKWPESWLAERQRTSDGELQFRRIETQKLMDGTMYSSG---- 518

Query: 483  LNQQIFSRFDLGYDKTIDKNTFKAQLLFIR------------DSY-VLGGALSQVNQSLG 529
              ++ +   +L Y++T   +   A L + +            DSY  +  ++   +Q   
Sbjct: 519  -QRKEYLEAELHYNRTFGDHMLGAVLKYSQDKTTNTSHNGNTDSYEKIVQSIQNRHQGFA 577

Query: 530  GRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLK 589
            GRF Y +  +Y  +    Y G + + +G Q+GFFP+  + WNIA ES        +N  K
Sbjct: 578  GRFTYGWKYRYFFDFNFGYNGSENFASGQQFGFFPAYSVAWNIAEESIIKKHLKWLNMFK 637

Query: 590  LRTSYGLTATNAAAGYFQYLQNFDNGD-TFYSRNPLTTSSTKDEG----PLANPNITWEK 644
            LR SYG    +     F Y++ F   D   Y    + TS+    G     +A+ +ITWE 
Sbjct: 638  LRYSYGKVGNDNVGTRFPYVEKFGTWDEDGYYYGDIGTSNYYYTGLTYSRIASSSITWEV 697

Query: 645  AKKFNIGLDVSMLKDKVWLTADYY---RNSYYDLLQTRRTNASAVIG----AVLPPENIG 697
            AKK ++GLD SM  DK   + DY+   RN  Y +    R+    +IG       P  N+G
Sbjct: 698  AKKHDLGLDFSMFNDKFSGSIDYFHEQRNGIYMV----RSYLPQIIGLNHITTKPYANVG 753

Query: 698  KNQYSGIELGLGYQNQINNFRYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFG 757
                 G +  + Y+ +I      + AN ++S +++   DE   +  Y+ + G  V Q  G
Sbjct: 754  SVLSEGFDGNIAYKQRIGEVDLTVRANMTYSKNEIKEYDEENSRYPYKMKYGFRVDQARG 813

Query: 758  YVADGFYNNTAEINNGPKVDGYLPVPGDLKYKDLNNDGIINTYDMTAIG-STKPVFFYGL 816
             +A+G + +  EI N P   G   +PGD+KYKD+N DG+IN  D   IG +T+P   YG 
Sbjct: 814  LIAEGLFKDYEEIRNRPS-QGSGIMPGDIKYKDVNGDGVINGDDEVPIGATTRPNLIYGF 872

Query: 817  TGGINYKGLDFSFTLNGKANRNVY---FNFINFAS-------TGAAGGYGQALESSLLRW 866
                 +K  D +    G    + +   F    F         T   G Y          W
Sbjct: 873  GVSAQWKEFDINVHFQGAGKSSFFIDGFTVYPFQEKSWGNILTDVVGNY----------W 922

Query: 867  TPATAS--QAEYPRLSVGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTN 924
            +  T     A+YPRLS G N NN + S++W++NG+Y+RL+NVE+GY++P   +  + L  
Sbjct: 923  SLGTNEDPNAKYPRLSYGGNSNNYRASTYWLRNGSYIRLKNVELGYNIPKRFVNKLHLDR 982

Query: 925  VRVFANGLNLLTATTLDGVDPEV 947
            VR++  G NLLT +     DPE+
Sbjct: 983  VRLYLMGTNLLTFSDFKLWDPEL 1005