Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1026 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  401 bits (1030), Expect = e-115
 Identities = 272/936 (29%), Positives = 443/936 (47%), Gaps = 47/936 (5%)

Query: 67   NKLRNSVALTLPDHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLY 126
            N +      T  D  V    G QK +    ++ TV    L++  T  +   L G + G+ 
Sbjct: 98   NVIMQEAKATAIDEVVITGTGAQKKITMTGAATTVDVNTLRT-STSSITNALAGNVAGIM 156

Query: 127  VVQNNFQLGSDEPAISLRGRTP-------LVVIDGVPRSYLSIDPEQIESISVIKDALGT 179
              Q + Q G++     +RG +        LV+IDG  R    I+ E IES +V+KDA  T
Sbjct: 157  ARQTSGQPGNNISEFWIRGISTFGAGSGALVLIDGFERDMNEINIEDIESFTVLKDASAT 216

Query: 180  ALYGMKAADGMLLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALAND 239
            A+YG + A+G++LITTKRG +   QI    +     +   P+ +D + YA L NEA    
Sbjct: 217  AIYGSRGANGVVLITTKRGKSGKVQIDAKVETTYNTRTYTPELVDGYTYANLMNEARTTR 276

Query: 240  GRQAIYTAADLDKYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLD 299
             ++A ++   L   +NG +   +PNV+W D +LK  AP  R  LNL GG +  RY+V + 
Sbjct: 277  NKEAFFSDEKLYILRNGLDKDLYPNVDWMDVLLKKGAPTYRATLNLNGGGSLARYYVSVS 336

Query: 300  YLSQSGFLVTDPSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTI 359
            Y+ + G    D  +  Y TN +++R+++R N+D+D+T ST L + + G +   N+PG   
Sbjct: 337  YVDEGGMYKVDEGLKDYNTNANYRRWNYRLNVDMDITKSTLLKVGVAGSLDKKNEPGMA- 395

Query: 360  ASIYSTLLTTPNNAYPKFNENGSLG--GNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLM 417
             +I+++ +     + P    NG +   G+   Q N +  + ++GY+ + N  L A+ +L 
Sbjct: 396  GNIWASAMRNNPISVPVMYSNGYVPAYGSENDQLNPWVAATQTGYQETWNNKLQANATLE 455

Query: 418  QKLDTFLPGLYASGAISFNSYYNENINRSKSFAVYSPVINPVTNQTSYKTIGGDGTQSNS 477
            Q L+    GL   G   F++   + INR K   ++    N  ++ +       D      
Sbjct: 456  QSLNFITKGLKFIGRYGFDTNNYQWINRKKFPEMWRAEQNRASDGSLVMKKIKDEQLMTQ 515

Query: 478  SSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIRDSYV--------LGGALSQVNQSLG 529
             S ++ N++ +   +L YD+T   +   A   + +D  +        +   + + +Q L 
Sbjct: 516  ESSSNGNRKEYLEAELHYDRTFGDHIVGAVFKYSQDKTIDTSQNGNDIMQGIDKRHQGLA 575

Query: 530  GRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLK 589
            GRF Y +  +Y  +    Y G + +  G Q+GFFP+    WNIA E         +N  K
Sbjct: 576  GRFTYGWKYRYFFDFNFGYNGSENFAPGHQYGFFPAYSAAWNIAEEPIIKKHLKWMNMFK 635

Query: 590  LRTSYGLTATNAAAG---YFQYLQNF--DNGDTFYSRNPLTTSSTKDEGPLANPNITWEK 644
            LR SYG    +        F YL  F    G  +         +       A   +TWE 
Sbjct: 636  LRYSYGKVGNDVVGDNDQRFPYLSTFGASGGFNYADIGQKYEFTGLSYTHYATTAVTWEI 695

Query: 645  AKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAV--IGAVLPPENIGKNQYS 702
            A K +IG+D S+  DK   T DY+      + Q R     +V   GA+    NIG     
Sbjct: 696  ATKHDIGIDFSLWDDKFTGTIDYFHEQRDGIYQQRNFIPISVGLNGAMRISTNIGSVLSK 755

Query: 703  GIELGLGYQNQINNFRYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADG 762
            G +   G++ +I +    +  N ++S S+++  DE +    Y+ + G  V QT G +A G
Sbjct: 756  GFDGNFGFKQRIGDVNLTLRGNFTYSKSEILEYDEEYSNYPYKSQRGFRVDQTRGLIALG 815

Query: 763  FYNNTAEINNGPKVDGYLPVPGDLKYKDLNNDGIINTYDMTAIG-STKPVFFYGLTGGIN 821
             + +  +I N PK      +PGD+KY D+N DG +N  D+  IG +T+P   YG      
Sbjct: 816  LFKDYDDIRNSPKQSWGDVMPGDIKYADVNGDGYVNDNDIVPIGATTRPNLVYGFGLSGQ 875

Query: 822  YKGLDFSFTLNGKANRN------VYFNFINFASTGAAGGYGQALESSLL--RWTPATAS- 872
            +KG+D +    G             + F N       G +G  L   +   RW       
Sbjct: 876  WKGIDINVLFQGSGKSTFCIDGPTVYPFEN-------GDWGNILTDVVKSNRWILGENED 928

Query: 873  -QAEYPRLSVGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFANG 931
              A+YPRLS G N NN + S++W++NG+YLRL+N+EIGY++P  L+  + L N+R++  G
Sbjct: 929  PNAKYPRLSYGGNSNNYRASTYWLRNGSYLRLKNLEIGYTIPKSLVNKMHLNNIRIYFMG 988

Query: 932  LNLLTATTLDGVDPEVLIGN---VPNQRIFNFGVNL 964
             NL+T ++    DPE+   N    P  + +  G+ +
Sbjct: 989  TNLVTFSSFKLWDPELGSSNGQKYPLSKSYTLGLTI 1024