Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1056 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  394 bits (1011), Expect = e-113
 Identities = 281/951 (29%), Positives = 457/951 (48%), Gaps = 70/951 (7%)

Query: 79   DHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDE 138
            D    V F  QK    I + +TV+ +ELK  P+  +   L G++ GL   Q   + G D 
Sbjct: 113  DEVTVVAFAKQKKESVISAISTVNPQELK-VPSSNLTTALAGRMSGLIAFQTTGEPGKDN 171

Query: 139  PAISLRGRT-------PLVVIDGVPRS---YLSIDPEQIESISVIKDALGTALYGMKAAD 188
                +RG T       PL++ID +  S      ++ + I   S++KDA  TALYG + A+
Sbjct: 172  AQFFVRGATTFGYKKDPLILIDNIELSTDDLARLNVDDIAQFSIMKDATATALYGARGAN 231

Query: 189  GMLLITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALA------NDGRQ 242
            G++L+TTK+G     +++   +  +    ++ +  D   +  L NEA+       N    
Sbjct: 232  GVILVTTKQGVAGKPKVSVRVEQSVSTPRKKVELTDPITFMRLNNEAVNSRRDPNNPAAS 291

Query: 243  AIYTAADLDKYKN---GTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLD 299
            A YT    +K +N   GTNP+ +P VNW DE+    A  +R N NL GG + VRY+V   
Sbjct: 292  ANYTVYSQEKIENTIAGTNPYCYPAVNWYDELFNNYALSTRVNTNLSGGGSAVRYYVAAS 351

Query: 300  YLSQSGFLVTDPSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTI 359
            Y    G +  D  +N Y +N +++RYS RSNI++DL+ +T  S+ + G   +   P  + 
Sbjct: 352  YTKDGGVIKND-KLNNYNSNINWQRYSVRSNINMDLSKTTEFSIRVNGNFDDYTGPLDSG 410

Query: 360  ASIYSTLLTTPNNAYPK--------FNENGSLGGNTE--FQNNLYGMSIKSGYRPSVNRN 409
              +Y  ++ T    YPK         N    L GN +     N Y   ++ GY+ S N  
Sbjct: 411  EGLYKKVMKTSPVMYPKSYPATGEYVNATHVLFGNADKGAYINPYADMVR-GYKESNNLL 469

Query: 410  LGADVSLMQKLDTFLPGLYASGAISFNSYYNENINRSKSFAVYSPVINPVTNQ-TSYKTI 468
            + A   L QK D    GL A   +S       ++ R+ +   Y    +  TN  T    +
Sbjct: 470  VAAQAELKQKFDFVTKGLDARILVSTTRSSYSDLTRAINPYYYQADYDKETNSYTLTNIV 529

Query: 469  GGDGTQSNSSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIR------DSYVLGGALS 522
             G+   S +    ++N   +    + Y++T   +     L++ R          L  +L 
Sbjct: 530  EGEEYLSYNQGSRNINTTNYVEAAISYNRTFGVHATSGMLVYTRREEKRSSEDTLQKSLP 589

Query: 523  QVNQSLGGRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLK 582
            + NQ L GRF Y YD++Y  E    Y G +R+ A +++GFFPS GLG+ I++ESF+  L 
Sbjct: 590  RRNQGLAGRFTYAYDSRYFAEFNFGYNGSERFAAHERYGFFPSFGLGYIISNESFWEPLL 649

Query: 583  NTVNSLKLRTSYGLTATNAAAG---YFQYLQNFDNGD----TFYSRNPLTTSSTKDEGPL 635
            NT++ LK + +YGL   +A       F YL   +  D     ++  N     +       
Sbjct: 650  NTMDKLKFKMTYGLVGNDAIGSSDDRFYYLSEVNPNDGGRGQYFGTNYGNQMNGVSISRY 709

Query: 636  ANPNITWEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPEN 695
             N NITWEK+KK N G+++ M    + + AD++      + Q R    S +  +     N
Sbjct: 710  PNTNITWEKSKKGNFGIELGMFNSALEVQADFFYERRTQIYQNRAYIPSTMGLSAGVSAN 769

Query: 696  IGKNQYSGIELGLGYQNQINNFRYFITANGSWSASK---VIFNDEPFRK--NAYEYRTGQ 750
            IG+    G++L + Y + I N  ++I   G+++ +K    ++ +  +      Y  R GQ
Sbjct: 770  IGEASSRGVDLSVNY-SYIANKDFWIKGMGNFTLAKGRYEVYEEPDYASYGQGYRSRIGQ 828

Query: 751  PVGQTFGYVADGFYNNTAEINNGPKVDGYL--PVPGDLKYKDLNNDGIINTYDMTAIG-S 807
            P+   +GY+A+  + +  ++ N P    +    +PGD+KYKDLNNDG I + D   +G  
Sbjct: 829  PINFNYGYIAERLFIDENDVANSPSQTSFNGGAMPGDIKYKDLNNDGKITSEDQIFLGYP 888

Query: 808  TKPVFFYGLTGGINYKGLDFSFTLNGKANRNVYFN------FINFASTGAAGGYGQALE- 860
             +P   YG      YKG D S    G A  + + +      F+N+   G   G  Q L+ 
Sbjct: 889  NQPEITYGFGFSTGYKGFDLSMFFQGNARVSFFIDPRNTSPFVNY-DAGGKTGVQQCLDV 947

Query: 861  SSLLRWTPATAS-QAEYPRLSVGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKL 919
             +   W+    +  A +PRLS     NN Q S++W+ +G+++RL+ VE+GY+     +K 
Sbjct: 948  IAKDHWSEDNRNIYAFWPRLSPTLVENNMQTSTWWMHDGSFIRLKTVELGYTFSQKALKK 1007

Query: 920  IGLTNVRVFANGLNLLTATTLDGVDPEVLIGN----VPNQRIFNFGVNLQF 966
            IG+ ++R++  G NLLT +     D E  +GN     P QR++N G+N+ F
Sbjct: 1008 IGVQSLRLYLTGSNLLTFSKFKLWDAE--MGNNGLGYPIQRVYNLGININF 1056