Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1125 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  381 bits (978), Expect = e-109
 Identities = 282/941 (29%), Positives = 458/941 (48%), Gaps = 87/941 (9%)

Query: 86   FGT-QKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDEPAISLR 144
            +GT QK    + S  ++   ELK  P+  +     G+L G+  VQ + Q G+D     +R
Sbjct: 205  YGTGQKKASMVGSVESIKPAELK-VPSTNLSTAFAGRLAGVIAVQKSGQPGADGANFWIR 263

Query: 145  GRT-------PLVVIDGVPRSYL---SIDPEQIESISVIKDALGTALYGMKAADGMLLIT 194
            G +       PL+++DGV  S     ++DPE I+S S++KDA  TA+YG + A+G++++T
Sbjct: 264  GVSTMNGVTDPLIILDGVQVSSSDLNNLDPEIIDSFSILKDATATAMYGTRGANGVMIVT 323

Query: 195  TKRGANMPKQI-TFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGR-QAIYTAADLDK 252
            TK G N+ K I  F  +  + Q    PKF+D   Y  LFNEA+ ND     +Y+   +D 
Sbjct: 324  TKSGMNLDKPIINFRMEAQMSQPTSTPKFVDGATYMELFNEAVNNDNSGDVLYSQDRIDG 383

Query: 253  YKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVT-DP 311
             + G NP+ +PNVNW DE+ K  +   + N N+RGG  +V YF  +    +SG L     
Sbjct: 384  TRAGLNPYIYPNVNWYDELFKDASYSEKFNFNIRGGGKRVDYFSSISVNHESGMLKNRSK 443

Query: 312  SINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPN 371
               +Y  N    RY+F++NI+  L+NS+ LSL L  ++R+   P   + +I++  + T  
Sbjct: 444  DFFSYNNNIEIMRYNFQNNINAKLSNSSKLSLRLNVQLRDMTTPNQGVGAIFNNAMNTSP 503

Query: 372  NAYPK-FNENGSLGG---------NTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLD 421
              +P  F ++G             N ++Q N    +  +GY       + A +   QKLD
Sbjct: 504  VEFPVYFPDDGETPYIKWGATERVNADYQTNPVAQAA-TGYNKGFQSTVIAALEFNQKLD 562

Query: 422  TFLPGLYASGAISFNSYYNENINRS---KSFAV--YSPVINPVTNQTSYKTIGGDGTQSN 476
                GL      SF ++ +    R      FA+  Y    N     T+ + IG + T + 
Sbjct: 563  FITEGLSFKALASFKNWSSSENKREGKWNKFALTGYEDDGNGGYTYTTSR-IGDEYTTNL 621

Query: 477  SSSPTDL-NQQIFSRFDLGYDKTIDKNTFKAQLLFIRDSYVLG--------GALSQVNQS 527
            ++  T+  +++ +    + Y +T  ++   A L++ +D  V          G+L Q  Q 
Sbjct: 622  TAKNTNSGDRRFYLEGMVNYSRTFGEHDVNAMLIYSQDELVNNTPGDGNFIGSLPQRKQG 681

Query: 528  LGGRFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNS 587
            L  R +Y Y  KY+ E+   Y G + +  G ++G FPS+  G+NI+ ESFF  LKN V+ 
Sbjct: 682  LAARASYAYAGKYMAEVNVGYNGSENFAKGHRFGLFPSIAAGYNISEESFFKPLKNVVSK 741

Query: 588  LKLRTSYGLTATNAAAG-YFQYLQNFDNGDTFYSRNPLTTSSTKDEGPL----ANPNITW 642
            LKLR S+GL   +   G  F Y+   D G   ++       +    GP+    AN +ITW
Sbjct: 742  LKLRGSWGLVGNDQINGSRFIYMSQIDLGGKGFTTG--VNQNVTYNGPVYQRYANEDITW 799

Query: 643  EKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPP-ENIGKNQY 701
            E  +K N G+D+ +    + LT D +R +  D+ Q + T  + +  A      N+   + 
Sbjct: 800  EVGEKINFGVDLQLF-HSLDLTFDIFRENRRDIFQEKGTTPTYMGTATTKVYGNLAAMRN 858

Query: 702  SGIELGLGYQNQINNFRYFITANGSWS-ASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVA 760
             G EL   Y  Q N   +F++  G+++ A   I   +   K  ++ + G    +   Y+A
Sbjct: 859  QGFELAASYNKQFNK-NWFVSFKGTFTYAHNEITQYDESPKYPWQSKIGVSANKNAIYIA 917

Query: 761  DGFYNNTAEINNGPKVDGYLPVPGDLKYKDLN------NDGIINTYD-MTAIGSTKPVFF 813
            DG + + A+I N  +  G   +PGD+KY +++      +D + +T D + A     P   
Sbjct: 918  DGLFIDAADIANHQQQLGAAVIPGDIKYINISRDWYGYDDNLTDTDDWVWAKHPGVPEIV 977

Query: 814  YGLTGGINYKGLDFSFTLNGKANRNVYFNFINFASTGAAGGYGQALESSLL------RWT 867
            YG    I +K LDFSF   G A  +      +         +G ++  ++L      RW+
Sbjct: 978  YGFGPSIKWKNLDFSFFFQGIARTSFMVKDFH--------PFGDSMLRNVLSWVADERWS 1029

Query: 868  PATA-SQAEYPRLSVGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVR 926
            P    + A YPRLS   N NN+++SS+W +NG +L+L+N EIGY+            N+R
Sbjct: 1030 PDNQNTNATYPRLSRKTNNNNNKLSSYWERNGAFLKLKNAEIGYT----------YKNMR 1079

Query: 927  VFANGLNLLTATTLDGVDPEVLIG---NVPNQRIFNFGVNL 964
            ++ +G NL+T    D  DPE   G   + P QR+FN G  +
Sbjct: 1080 LYISGSNLMTFAPFDLWDPEQGGGSGLSYPTQRVFNIGFQM 1120