Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1018 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  526 bits (1354), Expect = e-153
 Identities = 319/914 (34%), Positives = 489/914 (53%), Gaps = 29/914 (3%)

Query: 79   DHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDE 138
            D  V V +GTQK +    S + VS +E+    TP +   L G++PG+   Q   + G D+
Sbjct: 107  DEVVVVGYGTQKKISVTGSVSNVSTKEIAKIATPSLSNTLGGQIPGIVTRQATGEPGYDQ 166

Query: 139  PAISLRG------RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLL 192
             +I +RG      R+PL+++DG+ R   +I+ E++ESISV+KDA  TA+YG++ A+G++L
Sbjct: 167  ASIYIRGFGTWTNRSPLILVDGIERDMNTINTEEVESISVLKDASATAVYGVRGANGVIL 226

Query: 193  ITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDG-RQAIYTAADLD 251
            ITTKRG     ++T  S+Y +   +  P++++A  YA L NEA  N G     YT  +++
Sbjct: 227  ITTKRGQLGKPKVTLRSEYAVLTGLRYPEYINAAEYAGLMNEARDNAGVANMAYTDEEIE 286

Query: 252  KYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDP 311
             ++NG++P+ +PNVNW DE+LK     S  NLN+ GG+  VRYFV++ Y +QSG L  D 
Sbjct: 287  LFRNGSSPYLYPNVNWVDEVLKKNTTQSITNLNITGGTEVVRYFVNVGYTTQSG-LYRDN 345

Query: 312  SINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPN 371
              N Y TN+   RY++RS +DV+LT   ++ L + G I+N N PG +   I+  +  T  
Sbjct: 346  GDNAYSTNSRVNRYNYRSRVDVNLTKDLSVELGVGGIIQNRNFPGKSQYDIFYAIRNTSP 405

Query: 372  NAYPKFNENGSLGGN-TEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFL-PGLYA 429
             A+P  N +G+ G + T   NN +GM+ +SGY       L    S    L + +  GL  
Sbjct: 406  LAFPVKNPDGTPGASPTYLGNNPWGMTTQSGYETQNWNTLQGTFSARWDLSSLVTEGLSV 465

Query: 430  SGAISFNSYYNENINRSKSFAVYSPVINPVTNQTSYKTIGGDGTQSNSSSPTDLNQQIFS 489
            SG  +++ YY+ N    K F V   +         Y  +  +  + N +     N+ I+ 
Sbjct: 466  SGRFAYDHYYSNNKQYYKDFEVKQYMGEDAEGNAIYNILRNENIK-NVTLAESANRAIYY 524

Query: 490  RFDLGYDKTIDKNTFKAQLLFIRDSYV------LGGALSQVNQSLGGRFNYDYDNKYLLE 543
                 YD+T   +      LF R  YV        G++    Q + GR +Y+Y  +Y  E
Sbjct: 525  EVAANYDRTFGMHNITGMFLFNRRDYVNLRNTDRTGSVPYRRQGIAGRASYNYLQRYFAE 584

Query: 544  LATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRTSYGLTATN-AA 602
                Y G +++  G ++GFFPSV LG+ + +E F+ N    +++LKLR SYG    + ++
Sbjct: 585  FNFGYNGSEQFPKGKRYGFFPSVSLGYVLTNEDFW-NRNWWISNLKLRGSYGTVGNDISS 643

Query: 603  AGYFQYL--QNFDNGDTFYSRNPLTTSSTKDEGPLANPNITWEKAKKFNIGLDVSMLKDK 660
            +  F YL   N +    +  +      +   EG   N N+TWE AKK N+G D+ +  D 
Sbjct: 644  STRFLYLTTMNMNVSAGYMGKEGNNYMAGIMEGQTGNQNVTWETAKKLNVGFDLGLFNDV 703

Query: 661  VWLTADYYRNSYYDLLQTRRT--NASAVIGAVLPPENIGKNQYSGIELGLGYQNQI-NNF 717
            V L  D ++     +L TR+T    +   GA +P  N+GK +  GIE  L  + ++ N  
Sbjct: 704  VSLQVDIFKEKRDGILITRKTVPVLAGFSGASIPVGNLGKAENKGIETALEVKKRVANGL 763

Query: 718  RYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADGFYNNTAEINNGPKVD 777
             Y +  N S++ +K+I NDEP  K  Y+   G+ + QTFG VA GF+ +  +I N PK  
Sbjct: 764  FYSLRGNFSFARNKIIENDEPKPKYEYQDARGRRIDQTFGLVALGFFKDQDDIKNSPKQT 823

Query: 778  GYLPV-PGDLKYKDLNNDGIINTYDMTAIGSTK-PVFFYGLTGGINYKGLDFSFTLNGKA 835
                V PGD+KYKD+N DG+++ YD  AIG  + P   +G  G + YK  D S    G A
Sbjct: 824  FQSTVRPGDIKYKDINGDGVVDEYDKVAIGDPRTPEIMFGFGGTVAYKNFDVSLFFTGAA 883

Query: 836  NRNVYFNFIN-FASTGAAGGYGQALESSLLRWTPATASQAEYPRLSVGNNPNNSQVSSFW 894
              + +      +      G +    E    RWT  TA+ A+YP +   N+ NN Q S+ +
Sbjct: 884  KTSFFLEGATVYPFLNGEGTWNVLREVYDNRWTSETAATAKYPIVLNANSYNNYQTSTMY 943

Query: 895  VKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFANGLNLLTATTLDGVDPEVL--IGNV 952
            ++NG+YLRL++ EIGY+  G LI  + + N+R+F NG NLLT   +  VDPE    +GN 
Sbjct: 944  MRNGSYLRLKSAEIGYTFKGRLIDKMFMDNIRLFCNGQNLLTLDYIKIVDPESNNGVGNY 1003

Query: 953  PNQRIFNFGVNLQF 966
            P QR  NFG  + F
Sbjct: 1004 PMQRTINFGFQINF 1017