Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 926 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  420 bits (1079), Expect = e-121
 Identities = 265/892 (29%), Positives = 440/892 (49%), Gaps = 16/892 (1%)

Query: 87  GTQKNVKRIQSSATVSGEELKSF---PTPQVGLMLYGKLPGLYVVQNNFQLGSDEPAISL 143
           G Q NV    SS +++G    +F   P   +   LYGK+ GL V Q       +   +S+
Sbjct: 39  GYQMNVSSRTSSYSINGVNASAFEKSPYIDISKALYGKVAGLNVYQGTGSSADNVSTLSI 98

Query: 144 RGRTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLLITTKRGANMPK 203
            G  PLV+IDG PR    I   +IES  V+KDA   ALYGM+ A+G++LITTKRG +   
Sbjct: 99  HGNAPLVLIDGFPRDISDITSMEIESCYVLKDAAAAALYGMRGANGVVLITTKRGISNGL 158

Query: 204 QITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLDKYKNGTNPFTHP 263
           ++     +G+  Q   P F DA+ YA   N AL+ DG  A Y A +LD ++ G  P+ +P
Sbjct: 159 KVNVDYNFGVNTQFRSPDFADAYTYANALNTALSGDGLPARYNAQELDAFRTGIYPYDYP 218

Query: 264 NVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDPSINTYETNNSFK 323
           NV+W +E L  T       ++  GGS+K R++  +DY      L  +     ++T  +  
Sbjct: 219 NVDWWNETLNNTGLTHNLKMSFSGGSDKFRFYTVVDYYRDRSMLKKNTEDTRFDTTPTDT 278

Query: 324 RYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPNNAYPKFNENGSL 383
           R + R+N+DV +T ST L   + GR++         ++I++ +   P+ A+P   ENG  
Sbjct: 279 RLTVRTNLDVKVTESTLLKAGIVGRLKEFRGTRYGRSAIFNKIYGIPSAAFPIRYENGIY 338

Query: 384 GGNTEF-QNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGLYASGAISFNSYYNEN 442
           GG++ +   N   +    G+  +V   L AD+S+ Q L     GL A  ++SF++    N
Sbjct: 339 GGSSVYGTGNPVALLKDYGHIRNVYGTLLADLSIRQDLSALTKGLAAEASVSFDNIGGMN 398

Query: 443 INRSKSFAVYSPVINPVTNQTSYKTIGGDGTQSNSSSPTDLNQQIFSRFD----LGYDKT 498
              +K +   +   +  ++ T   T    GT S +   T   +++  R D    + Y++T
Sbjct: 399 ETTNKEYRYMNSNASITSDGTLVTTPAIYGTDSETLGHTQPFERLMLRSDFQAKVDYNRT 458

Query: 499 IDKNTFKAQLLFIRDSYVLGGA-LSQVNQSLGGRFNYDYDNKYLLELATSYMGYDRYKAG 557
             K+     L++   S V  G   SQ NQS+     Y YDN+Y L    +  G      G
Sbjct: 459 FGKHQVGGALIYDMQSVVKNGRNNSQKNQSVLVNATYTYDNRYSLNAVFNRSGSAYLPDG 518

Query: 558 DQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRTSYGLTATNAAAGYFQYLQNFDNGDT 617
           D++  +P+V   W +++E+F   +   +N  K+R SYGL+  +    +  + Q++ +G  
Sbjct: 519 DKYSNYPAVSAAWIVSNEAFMEKV-TPINLFKIRASYGLSGWDGNLSHELWRQSYGSGGA 577

Query: 618 FYSRN-PLTTSSTKDEGPLANPNITWEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLL 676
            Y+        S   EG L    +  EK++K   G D++   +++  T + +     D+L
Sbjct: 578 GYNFGVNAGGQSGGSEGDLPVIGLVAEKSQKATFGFDLAAFDNRLNATVEGFYEKRSDIL 637

Query: 677 QTRRTNASAVIGAVLPPENIGKNQYSGIELGLGYQNQINNFRYFITANGSWSASKVIFND 736
            +   + S +IG  +   N G  +Y G++  L + ++I +F Y I A+ S+  ++V+  +
Sbjct: 638 VSGANSTSGIIGITVGQVNEGIYKYKGVDASLSWNDKIGDFHYGIGASMSYLNTEVVNVN 697

Query: 737 EPFRKNAYEYRTGQPVGQTFGYVADGFYNNTAEINNGPKVDGYLPVPGDLKYKDLNNDGI 796
           + +++  Y Y  G  +GQ +G  A GF+N+  EINN P+       PGD+KYKD N D  
Sbjct: 698 QAYQEYDYLYTKGNRIGQMYGLEAIGFFNSQQEINNSPQQTFSDVAPGDVKYKDQNGDNR 757

Query: 797 INTYDMTAI-GSTKPVFFYGLTGGINYKGLDFSFTLNGKANRNV-YFNFINFASTGAAGG 854
           I+  D+  + GS+ P F++G     +YK L+ S    G     V   N   ++   + G 
Sbjct: 758 IDEKDIVKMFGSSVPRFYFGFNLNFSYKRLELSADFQGMTGVTVSLLNSPLYSPLVSNGN 817

Query: 855 YGQALESSLLRWTPATASQAEYPRLSVGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPG 914
                 +  + WTP   + A  PRL+   N NN + SS W ++G++L+LRN+ + Y+ P 
Sbjct: 818 ISNTFLNEEISWTPENKTNATMPRLTTQENLNNYRASSLWYRDGSFLKLRNLLVAYTFPK 877

Query: 915 HLIKLIGLTNVRVFANGLNLLTATTLDGVDPEVLIGNVPNQRIFNFGVNLQF 966
              +     +++VF  G NL +   +   DPE L    P+ R +  G+ L F
Sbjct: 878 SQTR---FADLKVFVQGTNLFSLDNIHFADPEQLGIAYPSTRSYWAGIKLNF 926