Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1120 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  380 bits (976), Expect = e-109
 Identities = 280/958 (29%), Positives = 464/958 (48%), Gaps = 103/958 (10%)

Query: 82   VPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDEPAI 141
            V V +GTQK +    + +++  +++   P   +   L G++ G+   Q + + G+D   +
Sbjct: 193  VVVAYGTQKKISSTAAVSSMKTKDVAQKPVINISNSLAGRMAGVIAKQGSGEPGADGSDL 252

Query: 142  SLRG------RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLLITT 195
             +RG      ++PLVV+DGVPR +  IDP  IE I+++KDA   A YGM  A+G++L+TT
Sbjct: 253  RIRGVATLGNQSPLVVVDGVPRDFSRIDPNMIEDITILKDAAAVAPYGMAGANGVVLVTT 312

Query: 196  KRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDG--RQAIYTAADLDKY 253
            K+G +    +++    G Q        ++++ YA + NEA  N G      Y+  DL+ Y
Sbjct: 313  KKGKSGAPVLSYNGYIGFQNPTRITDQVNSYEYALMKNEAAMNAGYPNYYAYSQHDLEMY 372

Query: 254  KN------GTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFL 307
            +         +P  +PN N   ++++  + ++  NL L GGS+K +Y+V L Y  Q G  
Sbjct: 373  RKTCAGDPDADPDRYPNSNGLRDLVQNNSVITNHNLQLSGGSDKFQYYVSLGYSYQEGMW 432

Query: 308  VTDPSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLL 367
             T            ++R++  +N+ VD T  T +SLSL G     N PG+    I     
Sbjct: 433  ST----------TDYQRFNLLANLSVDATKYTKISLSLGGWHEKKNYPGADTGDIMYQAY 482

Query: 368  TTPNNAYPKFNENGSLGGNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGL 427
             TP  +  +++ NG  G       +L+G++ +SGYR      L   +S+ Q+L  F+ GL
Sbjct: 483  RTPPISAIQYS-NGLWGQYVG--KSLFGLTYRSGYRQEPADQLNTSLSIEQQLP-FIQGL 538

Query: 428  YASGAISFNSYYNENINRSKSFAVYSPVINPVTNQTSYKTIGGDGTQSNSSSPTDLNQQI 487
               G I+++ Y      + K +    PV     +QT Y+ + G       +      + +
Sbjct: 539  SIKGVINYDPYRV----KKKKYLTPIPVYTLDASQTPYQFVEGFQGPEKPNLEQSFEESV 594

Query: 488  FSRFD--LGYDKTIDKNTFKAQ-LLFIRDSYVLGGALSQVNQSL---------------- 528
               +   + Y +T  K+T     ++  R+  V   +  ++N ++                
Sbjct: 595  SMTYQGMINYSRTFGKHTVTGLGVIEARERNVWNMSAKRLNYNINIDEINAGSSDPADIS 654

Query: 529  -GG------------RFNYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASE 575
             GG            R  Y+YDN+Y+ E++  Y G+  +  G ++GFFP+  LGWN+  E
Sbjct: 655  NGGTSWKERQVGYAFRLGYNYDNRYMAEVSGRYDGHYYFAPGKRFGFFPAFSLGWNLREE 714

Query: 576  SFFANLKNTVNSLKLRTSYGLTATNAAAGYFQYLQNFDNGDTF-YSRNPLTTSSTKDEGP 634
            SF  +++  ++ LKLR SYG +  N A   +QY+ ++  G+   +   P+       +G 
Sbjct: 715  SFMKDVE-WMDKLKLRLSYGESG-NLAGSSYQYMSDYGFGNAVNFGGVPMMGMWENLQG- 771

Query: 635  LANPNITWEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPE 694
              NPNITWEKAKKF+ G++ S+L     L ADY+     ++L        A  G  L   
Sbjct: 772  --NPNITWEKAKKFDFGVEFSVLNGMFSLEADYFYEKRSNMLMAPNALVPAEYGIPLSQV 829

Query: 695  NIGKNQYSGIELGLGYQNQINNFRYFITANGSWSASKVI----FNDEPFRKNAYEYRTGQ 750
            N G     GI+L L +  +I    + I+A G+++ ++ I    F  E    N    RTG+
Sbjct: 830  NAGSMHNQGIDLSLNFNKRIGK-DWMISAKGTFTFARNILDEVFETEATFNNPNRRRTGR 888

Query: 751  PVGQTFGYVADGFY-----NNTAEINNGPKVDGYLPV-PGDLKYKDLNN-----DGIINT 799
            P G  FGY A G++     N    +  G     +  V PGDL+Y+DL+      DG I+ 
Sbjct: 889  PDGTMFGYNALGYFTYDDFNPDGSLKAGIATQPWGQVYPGDLRYEDLSGPNGVPDGKIDE 948

Query: 800  YDMTAIGSTK--PVFFYGLTGGINYKGLDFSFTLNGKANRNVYFN---FINFASTGAAGG 854
            +D T IG +   P   +GL   + +K  D +  + G    ++       + F  +G+A  
Sbjct: 949  HDQTVIGFSNWAPEIIFGLAPTVQWKNFDLNALIQGATRTSISLGETLVMPFFDSGSA-- 1006

Query: 855  YGQALESSLLRWTPATASQAEYPRLSVGNNPNNS-QVSSFWVKNGNYLRLRNVEIGYSLP 913
                L+ S   WTP   + A YPRL+     NN  Q SS+WV++  Y+RL+++EIGY+LP
Sbjct: 1007 --TKLQFSD-HWTPDNTN-APYPRLTSEVTVNNHRQPSSWWVRDATYIRLKSIEIGYTLP 1062

Query: 914  GHLIKLIGLTNVRVFANGLNLLTATTL--DGVDPEVLIGN---VPNQRIFNFGVNLQF 966
               +  IG+++ RV+A+G NL T T    + +DPE    N      Q ++ FG+N+ F
Sbjct: 1063 RSALNFIGISSARVYASGQNLWTWTPFMKELIDPEAKSANGKYYMQQAVYAFGLNITF 1120