Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1070 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  388 bits (997), Expect = e-111
 Identities = 291/998 (29%), Positives = 482/998 (48%), Gaps = 74/998 (7%)

Query: 33   LTNSSKKFQVPSPAKKNSKQIPNDSLSNLRDSLRNKLRNSVALTLP------DHDVPVLF 86
            +T+   ++Q+  P+     Q+    L  + + ++ K R ++ + L       D  V V +
Sbjct: 83   ITDVEGRYQIMIPSDNAILQV--SYLGYVTEEIKVKGRRNINVMLNEDSKALDEVVVVGY 140

Query: 87   GTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDEPAISLRG- 145
            G QK    + S +++  +++   P+  +   L G++ GL  VQ + + G D     +RG 
Sbjct: 141  GQQKKESVVVSMSSIKPKDIV-VPSRSLNNSLAGQVAGLIAVQRSGEPGYDNAEFWIRGV 199

Query: 146  ------RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLLITTKRGA 199
                   +PLV++DGVPRS   I+P++IE+ SV+KDA  TA+YG + A+G++L+TTKRG 
Sbjct: 200  STFAGGTSPLVLVDGVPRSMSDIEPDEIETFSVLKDAAATAIYGAEGANGVVLVTTKRGR 259

Query: 200  NMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLDKYKNGTNP 259
                +I+F +++ I      P+F+ + +Y  LFNEAL NDG    ++   +  Y+N  +P
Sbjct: 260  VEKAKISFKTEHTISSPTRLPEFVGSADYLDLFNEALHNDGELPQFSDDLIAHYRNNDDP 319

Query: 260  FTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDPSINTYETN 319
              +PN NW D++L+      R  LN+RGG+ K +YFV   Y ++SG     P+   Y TN
Sbjct: 320  DLYPNTNWIDKMLRKNTFTHRYTLNVRGGTEKAKYFVSAAYYNESGIFKGSPT-KQYNTN 378

Query: 320  NSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPNNAYPKFNE 379
                R + RSNID++++++TT+ + L  +   +N PG+  A+I+ ++L TP   +P    
Sbjct: 379  IGIDRINLRSNIDMNVSSTTTVGVDLALQYLVNNYPGTGTANIFRSMLITPPYTFPAVYS 438

Query: 380  NGSLGGNTEFQN----NLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGLYASGAISF 435
            +G++   ++ ++    N Y + + SGY       + + V + QKLD    GL      S+
Sbjct: 439  DGTVSTYSQERDANMRNPYNLLMNSGYAKEYRTAIQSKVYVDQKLDFITKGLSVRLNASY 498

Query: 436  NSYYNENINRSKSFAVYSPVINPVTNQTSYKTI--GGDGTQSNSSSPTDLNQQIFSRFDL 493
            +      + R  +   Y    +       + T+  G    Q   +S T   ++I+    +
Sbjct: 499  DYDSEMIVRREYNPTRYHATGHDENGNLLFATVVSGNPELQDPKNSATSATKKIYIDAAI 558

Query: 494  GYDKTIDKNTFKAQLLFI-RDSYVLGGALSQVNQSLGGRFNYDYDNKYLLELATSYMGYD 552
             Y +T D++   A LL++ +++     AL    Q L GR  Y Y  +Y +E    Y G +
Sbjct: 559  NYKRTFDQHEVGAMLLYMQKETQYHNVALPYRKQGLVGRLTYGYGGRYFIEGNFGYTGSE 618

Query: 553  RYKAGDQWGFFPSVGLGWNIASESFFAN-LKNTVNSLKLRTSYGLTATNAAAG------- 604
             + +G+++GFFP+VGL + I++ESF+   +K  V  LKLR S G    +   G       
Sbjct: 619  AFASGNRFGFFPAVGLAYYISNESFYPEVIKKYVPKLKLRASVGRAGNDNTGGTRFLYRP 678

Query: 605  -YFQYLQNFDNG--DTFYSRNPLTTSSTKDEGPLANPNITWEKAKKFNIGLDVSMLKDKV 661
             Y      F  G  DT    N +       EG  A P + WE   K N G D+ +  +++
Sbjct: 679  TYKMDAGGFTQGYNDTGGGLNGIGNGII--EGRFAAPYLGWEVEDKQNYGFDIGLFDNRL 736

Query: 662  WLTADYYRNSYYDLLQTRRTNASAVIGAVL--PPENIGKNQYSGIELGLGYQNQINNFRY 719
             +  DY+ ++   +L  R+T     +G +   P +N GK +  G+++ +     I   + 
Sbjct: 737  EVIFDYFDSTRSQILLQRQTVPQ--LGGLRDDPWQNFGKVRNRGVDMSVNAHQNIGKVKL 794

Query: 720  FITANGSWSASKVIFNDEPFRKNAYEYRTGQPVG--QTFGYVADGFYNN---TAEIN-NG 773
                  +++ +K++  DE   K  Y+  TG+ V       Y+A+  Y     T   N NG
Sbjct: 795  SARGTFTFTRNKILEYDELPPKYDYQAITGKRVSDKDNLYYIAERLYTEDDFTVSTNANG 854

Query: 774  PKVD-----------GYLPVPGDLKYKDLNNDGIINTYD-MTAIGSTK-PVFFYGLTGGI 820
             K             G L  PGD+KY D+N DGII++YD +  IG  + P   YG     
Sbjct: 855  LKTYKLRSEIPQPTLGGLLGPGDIKYTDVNGDGIIDSYDRVRGIGHPETPEIIYGFGLNA 914

Query: 821  NYKGLDFSFTLNGKANRNVYFNFINFASTG---AAGGYGQA--LESSLLRWTPATASQ-A 874
             YKG+  S    G  N +V        S G    + G  Q+     +L RWT    SQ  
Sbjct: 915  EYKGIYASIFFQGAGNTSVLLG--GKTSEGWYPFSWGVDQSNYRTFALNRWTENNPSQDV 972

Query: 875  EYPRL--SVGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFANGL 932
              PRL  S  NN NN   S++W+++G++LRL+N+EIGY +P   +  IG    R++  G 
Sbjct: 973  IIPRLHKSNANNANNRVASTWWLRDGSFLRLKNIEIGYQIPKKFLSKIGFEAARIYLMGY 1032

Query: 933  NLLTATTLDGVDPEVLIGNV----PNQRIFNFGVNLQF 966
            NL     +   DPE    N     P  R +  G++  F
Sbjct: 1033 NLAVWDHIKYFDPEAGNANAGLNYPLPRTYTIGLDFTF 1070