Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1039 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  404 bits (1037), Expect = e-116
 Identities = 284/920 (30%), Positives = 468/920 (50%), Gaps = 42/920 (4%)

Query: 79   DHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDE 138
            D    V +G Q+    I +  TVS  ELK  P  ++   L G+L G+ V+Q + + G+  
Sbjct: 130  DEVTVVAYGKQRKASVIGAINTVSMNELK-MPVAKLSSGLAGQLAGIVVMQRSGEPGAGA 188

Query: 139  P----AISL--RGRTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLL 192
                  I+    G  PLV++DGV RS   +D E I S S++KDA  TALYG++ A+G++L
Sbjct: 189  DFWIRGINTFGAGNKPLVLVDGVERSMDLVDVEDIASFSILKDATATALYGVRGANGIVL 248

Query: 193  ITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNE-ALANDGRQAIYTAADLD 251
            ITTKRG     +I    +YG    +  P+  +   +   +N+  L + GR AI    +  
Sbjct: 249  ITTKRGTESAPKINARVEYGFTNPVRMPELANTEQWINYYNDITLESSGRLAI-QPEEKA 307

Query: 252  KYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQ-SGFLVTD 310
            KY N T+P  +PNV+W   + K  +  +R N+N+ GGS K+RY+V   + S+ S F ++D
Sbjct: 308  KYLNNTDPDLYPNVDWMQTLFKDFSNTTRVNINVTGGSPKIRYYVGGSFYSEGSVFNISD 367

Query: 311  PSINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTP 370
               + Y+ +  + ++SFRSNID+++T+ST LSLSL  +    N+P  +++ +Y+ ++ T 
Sbjct: 368  K--DRYDASMRYNKFSFRSNIDINVTSSTELSLSLSNQYETKNRPYGSLSDLYAYMIRTS 425

Query: 371  NNAYPKFNENGSLGGNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFL-PGLYA 429
              A P    +G+L        N Y     SGY      N  + +SL Q     + PGL A
Sbjct: 426  PIATPTIYSDGTL-AKPSTGTNPYNSLNNSGYSQDFFNNAQSLISLTQDFSKMVTPGLKA 484

Query: 430  SGAISFNSYYNENINRSKSFAVYSPVINPVTNQTSY--KTIGGDG---TQSNSSSPTDLN 484
            +   S+++Y    +NR  + + Y            +   T G D    T++NS + T +N
Sbjct: 485  NVKFSWDAYNAHTLNRIVTPSTYYATGRDEEGNLDFVRSTEGSDYMKLTRTNSGTRT-IN 543

Query: 485  QQIFSRFDLGYDKTIDKNTFKAQLLFIRDSYV------LGGALSQVNQSLGGRFNYDYDN 538
             +  + +D  +    +K+   A  LF   +Y          A +  N  + GR  Y Y +
Sbjct: 544  FEASANYDRLFG---EKHRVGALFLFSMRNYTDNFPGNYVDAFAHKNIGIAGRATYSYYD 600

Query: 539  KYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRTSYGLTA 598
            +Y  E    Y G + +    ++GFFPS  +G+ +++E+F+  L++T++ LK++ SYG   
Sbjct: 601  RYFAEFNFGYNGSENFAPDKRFGFFPSFAIGYMLSNEAFWDPLRSTIHLLKIKGSYGEIG 660

Query: 599  TNAAAG--YFQYLQNFDNGDTFY--SRNPLTTSSTK-DEGPLANPNITWEKAKKFNIGLD 653
             +   G   F +      G   Y    NP + S      G   N N++WEKA+K N+GL+
Sbjct: 661  NDQIGGNRRFAFNSTMKEGQYGYIFGTNPGSGSIVGISTGIPGNLNVSWEKAQKANVGLE 720

Query: 654  VSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPENIGKNQYSGIELGLGYQNQ 713
            + +  D++    DY+      +   + +  S V        N+G+ +  G +  + Y+ +
Sbjct: 721  LGLF-DQLKFQLDYFYEKRTGIYIQQESVPSIVGLNETQYVNLGEMKNQGFDGSMEYEQR 779

Query: 714  INNFRYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADGFYNNTAEINNG 773
             N++     AN +++ +K +++D+P     Y+   G    Q  G +A G + +  +I N 
Sbjct: 780  FNDWYVSARANFTYNRNKKLYDDKPTPIWPYQSEAGFAYRQQRGLIALGLFESEEDIANS 839

Query: 774  PKVDGYLPVPGDLKYKDLNNDGIINTYDMTAIGSTK-PVFFYGLTGGINYKGLDFSFTLN 832
            PK +     PGD+KYKD+N D +I+ YD  AIG T  P   YG    + +KG D S  + 
Sbjct: 840  PKQNFGNVRPGDIKYKDINGDNVIDAYDKVAIGYTDVPEINYGFGISLGWKGFDASLFMQ 899

Query: 833  GKAN-RNVYFNFINFASTGAAGGYGQA-LESSLLRWTPATAS-QAEYPRLSVGNNPNNSQ 889
            G  N   +      + ++      GQ   + +  RWT +  +  A YPRLS+    NN Q
Sbjct: 900  GVGNVTRIIGGDALYGASDNIERLGQIYADVAEKRWTTSNPNPNATYPRLSMSKVENNLQ 959

Query: 890  VSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFANGLNLLTATTLDGVDPEV-- 947
             S++W +N ++LRL+NVEIGY+LP H+ K +G++++RV+A G+NLLT +     DPE+  
Sbjct: 960  PSTYWQRNMSFLRLKNVEIGYTLPKHIYKRLGMSSIRVYAQGVNLLTFSKFKLWDPELDS 1019

Query: 948  LIGNV-PNQRIFNFGVNLQF 966
              GN+ P  R    G+NL F
Sbjct: 1020 NYGNIYPQMRTITLGLNLNF 1039