Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1049 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  368 bits (944), Expect = e-105
 Identities = 280/940 (29%), Positives = 429/940 (45%), Gaps = 60/940 (6%)

Query: 80   HDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDEP 139
            H  P+ F  +      +S++ V+GEEL+  P   +       + G+   +   + G  E 
Sbjct: 117  HTTPLPFNRKPKKFVTESTSIVTGEELEKHPVTVLQNAFTSTVTGVETYEAQSEPGWSET 176

Query: 140  AISLRG--------RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGML 191
            A+ +RG        R+PL+++D V R    +D   IESI+++KDA  TA+YGM+ A+G +
Sbjct: 177  AMYIRGIRTMNASARSPLIIVDNVERDLSFLDAYPIESITILKDAAATAIYGMRGANGAV 236

Query: 192  LITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLD 251
            L+TTKRG     +I FT + G Q     P+  +++NYA   N+A   DG    Y+  DL 
Sbjct: 237  LVTTKRGETGKTKINFTQEVGFQTIAGIPESQNSYNYALSRNQARYLDGLSPEYSDEDLK 296

Query: 252  KYK--------NGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQ 303
             Y+         G   + + N NW D +L+  AP  R NL++ GG+ + RY+V   YL Q
Sbjct: 297  YYRRVCNGEQLEGMAKYKYFNTNWHDTMLRDAAPQYRTNLSVSGGNARARYYVSFSYLRQ 356

Query: 304  SGFLVTDPS--INTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIAS 361
             G   T  +     Y T     RY+ RSNID+D+     +S+ L GRI N +QPG  + +
Sbjct: 357  EGLFDTKWTEWNEGYSTQEVLNRYNLRSNIDIDVNKFLNVSMDLGGRIDNISQPGIDVWN 416

Query: 362  IYSTLLTTPNNAYPKFNENGSLGGNTEFQNNLYGMSIKS-GYRPSVNRNLGADVSLMQKL 420
            +++         YP F  NG     T   +      I   G   +  RNL   V+    L
Sbjct: 417  LFTWGAGENLPVYPVFCPNGEFFMPTSSDSKNGAAQIAGRGVEQNRRRNLYTTVTATGNL 476

Query: 421  DTFLPGLYASGAISFNSYYN----ENINRSKSFAVYSPVINPVTNQTSYKTIGGDGTQSN 476
            D  +PGL A    SF+SY      +  + +  +  Y   +N  +  T  +        + 
Sbjct: 477  DALVPGLKAKMTFSFDSYETFQKVQQADVNVYYYNYMADVNDPSEYTYQRMRTYKALPNA 536

Query: 477  SSSPTDLNQQIFSRFDLGYDKTIDKNTFKAQLLFIR--DSYVLGGALSQVNQSLGGRFNY 534
            ++SP D    +     L Y+ T  K+   AQ  FIR   + V G   S    S   +  Y
Sbjct: 537  TTSPRDYYYNLNMNGGLAYEHTFGKHAVNAQ-AFIRTYQNVVRGQESSNRYLSYNAQATY 595

Query: 535  DYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRTSY 594
             Y+N+Y+L    S MG D Y  G+++G FP   +GW ++ ES+  N  + VN LKLR SY
Sbjct: 596  VYNNRYILSGNISRMGSDNYADGERFGTFPGGSVGWVLSEESWLKN--SFVNLLKLRASY 653

Query: 595  GLTATNAAAGY--FQYLQNFDNGDTFYSRNPLTTSSTKDEGPLANPNITWEKAKKFNIGL 652
            G  A  A  G   + Y   F  G  +      + +    E    N NI WE +   N G+
Sbjct: 654  G-RAGQAVTGVSRYPYQGTFTEGGGYNFGTSQSYTEGVYESTAGNKNIKWEISDMANFGV 712

Query: 653  DVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPENIGKNQYSGIELGLGYQN 712
            D  +   K++ + D+++    ++L +R T    + G   P ++ GK +  G E+ LG+ N
Sbjct: 713  DFDLWNKKIYGSVDFFKEWRSNILVSRST-VPGLFGVNAPQDSYGKAETKGFEITLGHSN 771

Query: 713  QINNFRYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTF-----------GYVAD 761
            +I +F Y+I    +++ +K+   DE     AY+ RTG  + Q+              + +
Sbjct: 772  RIGDFEYYIDGMLTFNTNKITEMDELTPDYAYQARTGNRIDQSQLLIWKQWASNPDLIPE 831

Query: 762  GFYNNTAEINNGPKVDGYLPVPGDLKYKDLNNDGIINTYDMTAIGSTK-PVFFYGLTGGI 820
             + +  A     P         G+  ++D N D  I++YD    G T  P     +  G 
Sbjct: 832  SYEDAVANPQKYPWNAAGKYKLGNAVFQDTNGDRKIDSYDKVPTGYTNIPELIPTIRLGF 891

Query: 821  NYKGLDFSFTLNGKANRNVYFNFINFASTGAAGGYGQALESSLLRWTPATAS----QAEY 876
            ++KG D    L    NR V          G  G     + ++   +T          A+Y
Sbjct: 892  SWKGFDARAVLTAYLNRTVPCRENMDYGFGWGGTSTHEITNTWGYYTDDPTDPRNINAKY 951

Query: 877  PRLSVG------NNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFAN 930
            PRLS        N P N   S+ WV NG++L LRNVE+GYSLP  LI  + +T  R++ +
Sbjct: 952  PRLSTSFSDLDRNYPYNE--STIWVVNGDFLSLRNVEVGYSLPARLISKVNMTKCRLYFS 1009

Query: 931  GLNLLTATTL-DGVDPE---VLIGNVPNQRIFNFGVNLQF 966
            G NL   + L  G DPE     I   P  R F FGVN+ F
Sbjct: 1010 GYNLCNWSHLPKGFDPENPTNYIWAYPKTRSFTFGVNIGF 1049