Pairwise Alignments

Query, 432 a.a., RNA helicase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  102 bits (253), Expect = 3e-26
 Identities = 95/385 (24%), Positives = 175/385 (45%), Gaps = 26/385 (6%)

Query: 2   SLDKLKLSKPLVAAMTDAGFLTPKEIQARTMSRILGGQDVIAVGPEGSGKTTTYVLATLM 61
           S  +L +  PL   +T+ G+++P  +QA T+  +L G+DV+A    GSGKT  + L  L 
Sbjct: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query: 62  KLKYAFEE-----APRALILVPDAEHVDHVLEQF--KLLNRNSTFRILGIDSRGAVDTQM 114
           +L  A          R L+LVP  E    V + F     + N   +I+      +V+ QM
Sbjct: 70  RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129

Query: 115 NEITDGCDIIVAVPDRARALYLKLALNTNKIQLFIVDNAELIVKKGLQLPVVE-LANSAY 173
             +  G D++VA P R   L    AL   ++  F++D A+ ++  G    + + LA    
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189

Query: 174 KSQHVVFTEVMHEKLNHMISPFMKDSTTTIEVDEIGEKQAEVYQQMLYQVPNFRTKLNLL 233
           + Q ++F+    E++  + +  +      +E     E+++ + Q+++    N   K  LL
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQ---PLEYHLQSEQESTIEQRVI--TVNREQKTALL 244

Query: 234 TLLLNDTEVFDKVVVFVNTRLTAQTVYKNFNQHKEGEISIYRSLFFDDKGYDD----IED 289
             L+   + + + ++FV+ + T      N    K  +  I   +F  DK        ++ 
Sbjct: 245 AHLIKQHQ-WSQALIFVSAKNTC-----NHLAQKLSKRGISAEVFHGDKAQGARTRVLDG 298

Query: 290 FKDNPDARVLIVANENLGELNIEGIPFILHFELPEQKETLIQRIVKHG--DEDVVAITFS 347
           FK N +  VLI  +     ++I+ +P +++F+LP      + RI + G   E  +A+T  
Sbjct: 299 FK-NGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357

Query: 348 TDIELIEVKKIEQAIGQKLEVMELP 372
           +  E      IE+    KL   ++P
Sbjct: 358 SHEEYHHFGVIEKKNKIKLVREQIP 382