Pairwise Alignments

Query, 678 a.a., ligand-gated channel protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 684 a.a., TonB-dependent receptor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  100 bits (250), Expect = 2e-25
 Identities = 150/682 (21%), Positives = 271/682 (39%), Gaps = 62/682 (9%)

Query: 34  QSDSTLKSTQLKEVQIREYR-LTEQSKSPTPVQILSADEL--KRINSLSVADAIRYLSGV 90
           Q  S  K+   K + IRE   L ++      VQ    D L  K   +LS+AD + + S +
Sbjct: 5   QHSSDNKNWAEKGIVIREVEILGKRPMKDIGVQQTRFDSLVLKENIALSMADILTFNSSI 64

Query: 91  QLKDYGGIGGMKTVNVRSLGTNHTAVFLDGIQIGNAQNGQVDLGKFSLNNLEEIALYSGQ 150
            +K YG    + TV+ R    +HT V  +G++I N   G  D        +++ +L  G 
Sbjct: 65  FVKSYGR-ATLSTVSFRGTSASHTQVTWNGMRINNPMLGMTDFSMIPSYFIDDASLLHGT 123

Query: 151 KPELLIPAKGYASASSIYLKTKDPDFEKSQKQKIELGLKNGSFGLINPSLVYLYKINEKL 210
                +   G      + L T     E    Q ++ G+  GSF   +  L   Y  ++  
Sbjct: 124 SS---VNMAGGGLGGLVKLSTVPAHQEGFGMQYVQ-GI--GSFSTFDEFLQLKYG-DKHW 176

Query: 211 KASINTEYIHADGKYKFRYTN---GVFDT--TAVRNNGNVERFR---------LQAALFG 256
           + S    Y  +   YK+R  +    ++D     +     +ER R         LQ   + 
Sbjct: 177 QISTRAVYQSSPNDYKYRNHDKKENIYDDKYNIIEQYYPIERNRSGAYKDLHILQEVYYN 236

Query: 257 KFNGGKWHAQAYSFLSDRGLPGAIV--ANRFDFTQRIWDRDFFIQGNAE-KNLSNKFTIL 313
              G ++   A+   S+R L        +  DF  R   R+  ++      +    + + 
Sbjct: 237 TGKGDRFGLNAWYTDSNRELALLTTDQGDLMDFENR--QREHTLRSVLSWDHTRENWKVS 294

Query: 314 VNGKY-----AYVYQRYLDPDYVTTTGFLDNRFKEQEAYLSVAAKYKISS---VWEAAYA 365
             G Y     AY Y+R L    + T     +R K    Y  +  +Y  S    +     A
Sbjct: 295 ARGGYVHTWLAYDYKRDLGNGIMAT--MTRSRSKVNTFYGQLDGEYFFSDKLLLTAGVSA 352

Query: 366 SDYTFQTLDANIYR-------FPYPTRNTFLNVLSSSFIFKQLNIQ-----ANLLSTTVV 413
             +   +LD ++ +       +    +N  +       I    N+       N L  ++V
Sbjct: 353 HQHLVNSLDKDLNKDDNKNDKYGQGRKNDSIVYFDKGRIELSGNVSLKWQPVNRLGMSLV 412

Query: 414 DRVKLYSSTGNKQVFSPTVMLSWKLLKDQDIRVRAFYKDIFRMPTFNDLYYTFIGNTLLN 473
            R +++ +     +  P   + + L K  +I  +A     +R PT NDLY+   GN  LN
Sbjct: 413 LRGEMFGTKWAPVI--PAFFVDYVLSKRGNIMAKASITRNYRFPTLNDLYFLPGGNPALN 470

Query: 474 PEYTKQYDVGVTYFKNFKNQEIKFIDIQSDVYYNRIKDKIVAQPGANLYRWIMYNIGLVD 533
            E    Y+ G+++  +  N  +  +   +  +   I D I+  P +  + +   N+  V 
Sbjct: 471 NESGFTYETGLSFSVDKDN--VYTLSGSASWFDQHINDWIIWLPTSKGF-YSPVNLKKVH 527

Query: 534 IRGLELNAKTAFEPLSNFIINIGINYTYQKAV---DVTSKLEETYQDQIPYIPENSGSFL 590
             G+E+ A  A      + + +   + +  ++   + TSK +++   Q+PYIPE S +  
Sbjct: 528 AYGVEVQADYAVAIDKAWKLGLNGTFAWTPSINEGEPTSKADQSVGKQLPYIPEYSATLS 587

Query: 591 TWLDYHQWHANYGFIYTGFRYNQKANNI--YNYMEPWYTHDAAIGYEFKLKNGSIGINGE 648
             L Y  W   Y + Y   RY   +N +    ++ P+   +  +   F L+   + + G 
Sbjct: 588 GRLTYRSWGLLYKWCYYSERYTMTSNAVSYTGHLPPYLMSNVTLEKGFSLRWADLSLKGT 647

Query: 649 VNNLLNQYYDIIPNFPMPGRNY 670
           VNNL ++ Y  + + PMPG N+
Sbjct: 648 VNNLFDEEYLSVLSRPMPGINF 669