Pairwise Alignments

Query, 678 a.a., ligand-gated channel protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 692 a.a., putative TonB-linked outer membrane receptor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  105 bits (262), Expect = 7e-27
 Identities = 147/693 (21%), Positives = 280/693 (40%), Gaps = 63/693 (9%)

Query: 20  ILWTGFLLPLNTRAQSDSTLKSTQLKEVQIREYRLTEQSKSPTP---VQILSADEL--KR 74
           +L+ G  LP    AQ  +++  T+ + ++I E  +T   K P     VQ    D +  K 
Sbjct: 7   LLFVGVSLPFLLAAQQKNSVSITK-RVLRIPE--VTVVGKRPMKDIGVQRTRFDSIAMKE 63

Query: 75  INSLSVADAIRYLSGVQLKDYGGIGGMKTVNVRSLGTNHTAVFLDGIQIGNAQNGQVDLG 134
             +LS+AD + + S V +K+YG    + TV  R    +HT V  +G++I N   G  D  
Sbjct: 64  NIALSMADVLTFNSSVFVKNYGR-ATLSTVAFRGTSPSHTQVTWNGMRINNPMLGMTDFS 122

Query: 135 KFSLNNLEEIALYSGQKPELLIPAKGYASASSIYLKTKDPDFEKSQKQKIELGLKNGSFG 194
                 +++ +L  G      +   G      + L T   + E    Q ++ G+  GSF 
Sbjct: 123 TIPSYFIDDASLLHGTSS---VNETGGGLGGLVRLSTSPANHEGFGLQYVQ-GV--GSFS 176

Query: 195 LINPSLVYLYKINEKLKASINTEYIHADGKYKFRYTN--------------GVFDTTAVR 240
             +  L   Y  ++  ++S    Y  +   YK+R  +                + T   R
Sbjct: 177 TFDEFLRLTYG-DKHWQSSTRVVYSSSPNDYKYRNRDKKENIYDEDKNIIGSYYPTERNR 235

Query: 241 NNGNVERFRLQAALFGKFNGGKWHAQAYSFLSDRGLP--GAIVANRFDFTQRIWDRDFFI 298
           +    +   LQ   +    G K+   A+   S+R L        N  DF  R  ++ F  
Sbjct: 236 SGAYKDLHVLQEIYYNTGEGDKFGLNAWYINSNRELAMLSTDYGNDMDFENRQREQTFRG 295

Query: 299 QGNAEKNLSNKFTILVNGKYAYVYQRYLDPDYVTTTG------FLDNRFKEQEAYLSVAA 352
             + ++ +  K+ + V G Y + +  Y   DY    G         +R K    Y S   
Sbjct: 296 VLSWDR-VREKWKVGVKGGYIHTWMAY---DYKRDKGNGEMASMTRSRSKINTFYGSADG 351

Query: 353 KYKISSVW---EAAYASDYTFQTLDANIYRFPYPTRNTFLNVLSSSFIFKQLNIQA---- 405
            Y  S  W          +  ++ D NI        N  +       +    ++ A    
Sbjct: 352 DYAPSEKWLFTAGVSVHQHLVESADKNIIS---QEGNKAVVGYDKGRVEFSGSVSAKWRP 408

Query: 406 -NLLSTTVVDRVKLYSSTGNKQVFSPTVMLSWKLLKDQDIRVRAFYKDIFRMPTFNDLYY 464
            +  + ++V R  ++ +     +  P   +   L K  +I  +A     +R PT NDLY+
Sbjct: 409 VDRFAASLVLREDMFGTEWAPVI--PAFFIDGVLSKKGNIVAKASISRNYRFPTLNDLYF 466

Query: 465 TFIGNTLLNPEYTKQYDVGVTYFKNFKNQEIKFIDIQSDVYYNRIKDKIVAQPGANLYRW 524
              GN  L  E+   YDVG+++  +   + +  +    + + + I D I+  P    + +
Sbjct: 467 LPGGNPDLKSEHGFTYDVGLSF--SVGKENVYALSGGINWFDSHIDDWIIWLPTTKGF-F 523

Query: 525 IMYNIGLVDIRGLELNAKTAFEPLSNFIINIGINYTYQKAVDVT---SKLEETYQDQIPY 581
              N+  V   G E NA        ++ +++   +++  +++ +   S  +++   Q+PY
Sbjct: 524 SPRNLKKVHAYGAETNAHLDIMLGKDWKLDMNGTFSWTPSINESEPMSPADQSVGKQLPY 583

Query: 582 IPENSGSFLTWLDYHQWHANYGFIYTGFRYNQKANN--IYNYMEPWYTHDAAIGYEFKLK 639
           +PE S +    L +  W   Y + Y   RY   +N+  +  Y+ P++ ++  +  +   +
Sbjct: 584 VPEFSATVTGRLSWRTWSLLYKWCYYSQRYTMSSNDYTLTGYLPPYFMNNVTLEKQLSFR 643

Query: 640 NGSIGINGEVNNLLNQYYDIIPNFPMPGRNYRL 672
              + + G +NNL ++ Y  + + PMPG N+ +
Sbjct: 644 WADLSLKGSINNLFDEEYLSVLSRPMPGINFEI 676