Pairwise Alignments

Query, 678 a.a., ligand-gated channel protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 718 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 12  MQFFLFSSILWTGFLLPLNTRAQSDSTLKSTQLKEVQIRE-YRLTEQSKSPTPVQILSAD 70
           M+  + S ++  G  + L   AQ   ++KS  L +V + E Y+  +  KS   V+++  D
Sbjct: 1   MRIGIISGVI--GLFVTLPVHAQKSDSIKSMLLPDVVVTESYQQRQAKKSALTVEVIEQD 58

Query: 71  ELKRINSLSVADAIRYLSGVQLKDYGGIGGMKTVNVRSLGTNHTAVFLDGIQIGNAQNGQ 130
            L++  + +   A+  + GVQ  D G   G     +R +G N  AV  +GI+    Q G 
Sbjct: 59  FLRKHFTGNFMQAVENIPGVQAMDIG--SGFSKPMIRGMGFNRIAVLENGIKQEGQQWGA 116

Query: 131 VDLGKFSLNNLEEIALYSG 149
               +    N+E + +  G
Sbjct: 117 DHGLELDAFNIEAVNVLKG 135