Pairwise Alignments

Query, 678 a.a., ligand-gated channel protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 715 a.a., TonB-dependent receptor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 58.9 bits (141), Expect = 8e-13
 Identities = 135/655 (20%), Positives = 244/655 (37%), Gaps = 142/655 (21%)

Query: 60  SPTPVQILSADELKRINSLSVADAIRY-LSGVQLKDYGGIGGMKTVNVRSLGTNHTAVFL 118
           +P   +++++D++K++N+ +VAD ++  L G++      +     +N++  G N     +
Sbjct: 125 APIITRVITSDDIKKVNANNVADLLKTELPGIEFSF--SMDQQTAINMQGFGGNSVLFLV 182

Query: 119 DGIQIGNAQNGQVDLGKFSLNNLEEIALYSGQKPELLIPAKGYASASSIYLKTKDP---- 174
           DG ++       VD  + +L+N+E I +  G    L   +      + I  ++ DP    
Sbjct: 183 DGERLAGETLNNVDYERLNLDNVERIEIVKGAASTLYGSSAIGGVINIITRESDDPWNLN 242

Query: 175 ---DFEKSQKQKI--ELGLKNGSFGLI--------------NP---SLVY---LYKINEK 209
               F +   Q+     G   G F  +              NP   S V+   ++   E+
Sbjct: 243 LNSRFSEHNDQRCGGTAGFNAGKFNSLTNVQYNNVDTYAVDNPGDFSTVFGSRVWNFKER 302

Query: 210 L-KASINTEYIHADGKYKFRYTNGVFDTTAVRNNGNVERFRLQAALFGKFNGGKWHAQAY 268
           L    + T  +     Y FR  N   DT         +R+R        F+GG      +
Sbjct: 303 LIYRPLETLKLTGRVGYYFRERNKPGDTQ--------DRYR-------GFSGGMKANYTF 347

Query: 269 SFLSDRGLPGAIVANRFDFT--QRIWDRDFFIQGNAEKNLSNKFTILVNGKYAYVYQRYL 326
           + +S+  L      +++D +  Q ++  D     N + N+   +    NGK+        
Sbjct: 348 NIMSN--LEVGYTFDQYDKSDYQSLYKNDVRDYSNVQHNVHALYNYTFNGKHTLTVGADY 405

Query: 327 DPDYVTTTGFLDNRFKEQEAYLSVAAKYKISSVWEAAYASDYTFQTLDANIYRFPY-PTR 385
             DY+ +  F DN                          +D+T  T DA   +F + PT 
Sbjct: 406 LRDYLMSYQFTDN--------------------------ADHTMHTADA-FGQFDWNPT- 437

Query: 386 NTFLNVLSSSFIFKQLNIQANLLSTTVVDRVKLYSSTGNKQVFSPTVMLSWKLLKDQDIR 445
                        ++LN+ A L           Y S  N +  SP + + +K+    +  
Sbjct: 438 -------------ERLNVIAGLRFD--------YFSDSNVRHLSPHLGMMYKI---GNCS 473

Query: 446 VRAFYKDIFRMPTFNDLYYTF--------IGNTLLNPEYTKQYDVGVTYFKNFKNQEIKF 497
           +R  Y   FR PT  ++Y  F         GN  L  E +  + V   Y K+  N  I  
Sbjct: 474 LRGSYSQGFRSPTLKEMYMVFNMANMMMIYGNPDLKSETSHNFSVSAEYTKSRYNFSI-- 531

Query: 498 IDIQSDVYYNRIKDKIVAQPGANLYRWIMYNIGLVDIRGLELNAKTAFEPLSNFIINIGI 557
                  YYN + ++I      +    I  N   +DI G++ N        + +   +G 
Sbjct: 532 -----TGYYNLVHNRINTVYSEDPKGQIYTNTDKMDIAGIDANVS------AKYPCGLGY 580

Query: 558 NYTYQKAVDVTSKLEETYQDQIPY---IPENSGSFLTWLDYHQWHANYGFIYTGFRYNQK 614
             +Y    +     ++ + D  P+   +  + G  L  +D+     NY     G   ++ 
Sbjct: 581 RLSYTYIHEFMRDGQKKFTDTRPHTATVRIDWGKTLNKIDF-----NYSL--NGRLLSKV 633

Query: 615 ANNIYN--YMEPWYTHDAA--IGYEFKLKNGSIGINGEVN-NL-LNQYYDIIPNF 663
             NIYN  +  P     A    GY       S+GI   +N NL +N  +D +P++
Sbjct: 634 KTNIYNDSFNNPSAGSQAVEYPGYMIWDLTFSLGIIKGINMNLAVNNLFDYVPDY 688