Pairwise Alignments

Query, 182 a.a., antitermination protein NusG from Pedobacter sp. GW460-11-11-14-LB5

Subject, 166 a.a., transcriptional activator rfaH, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.1 bits (131), Expect = 6e-13
 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 13  KKWFVIYTRPRWEKKVDRLLQEQGFESFCPVRNVENQWADRKKIVSLPLFTGYVFVKID- 71
           K W+++Y +PR E +  + L  Q  E++ P+ + E     +K+I  +PLF  Y+F+  D 
Sbjct: 2   KAWYLLYCKPRSEVRAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFDP 61

Query: 72  -EREGYKIRYTLGVLNFINYMGKPAVVRDSEIEKLKHIMDTYNDVDVVSLTGVSKGDRVR 130
            +    ++  T GV   +N   K   + D  I  ++    T +   + +   +  G+++R
Sbjct: 62  SQTSVKQVHSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQSVLDTPLELKTGEKIR 121

Query: 131 ISNGLFHNQE 140
             +G F + E
Sbjct: 122 FKDGPFADLE 131