Pairwise Alignments

Query, 666 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 557 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  150 bits (380), Expect = 1e-40
 Identities = 137/462 (29%), Positives = 204/462 (44%), Gaps = 33/462 (7%)

Query: 1   MKKILYFLLIISTGLGSCKKFLATVPTDNLLPEEYYDSEAKLLNALAGVYYPLETSALYG 60
           MKKI+Y++ +    L      L       +  + Y ++  +  + L GVY      A+YG
Sbjct: 1   MKKIIYYIAMSVMCLLPFSCSLEEETRTEVEKKNYMNNAEEAKDVLLGVYRTNTLDAMYG 60

Query: 61  NFLSSDYNISDEAFYQRSAQTTGVSVY---NFDYSDASVAALWQQCYVGIERANMLIANI 117
            +LS  +N+  +      +      +    +F  + + V   W   Y GI RAN  +  I
Sbjct: 61  YYLSILFNLGTDISQVEGSGNENFRIIPTNSFPTTQSEVQQTWAALYTGIYRANDFLERI 120

Query: 118 NVA----NIAENKRAPI-LGEALFLRGYYYFLLASNYGDVPLKTLPTKSPSAEDVQVPRT 172
           +         + K A + + EA  LRG +YF L   +G+V L T    S       V   
Sbjct: 121 SNKIGSYTTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQSA 180

Query: 173 PLKQVYAQILEDMTKAEGLTSKITDLGFSG----RVSKTTVEGILARVCLTMAGAPLKDE 228
           P K VY  I +D+  A  +    TD  +      R SK    G+L +V  T AG P+KDE
Sbjct: 181 PEK-VYEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVKDE 239

Query: 229 SKYADAKAWALKVKESGEHRLNPSYKQLFVNMHQDLYDIKDSMWEVEFKGNGADGLGSN- 287
           SK+  A   A  + ESG+H L   Y+QL+ N     +D  +S+ E+ F      G     
Sbjct: 240 SKWEAAAKTARILVESGKHGLLKDYEQLWKNTCNGTWDPTESLIEISFYSPTVSGNSDPV 299

Query: 288 GRVGSLGGIQMQVATGIGLKIGYSYGFLHTTAKLFNLFQPGDLRRDWNLAQFNYIATYPD 347
           GR+G   G++     G+      +   +HT   L       D+RRD ++A + Y  T   
Sbjct: 300 GRIGKWNGVKTTAIAGVRGSCAANVKVVHTFV-LDWREDVSDIRRDLSIANYQYTDTKKS 358

Query: 348 RYYYNYY-------------TAAQ--IYNRDAAKFRREAYVLDNK--NQNTTPINYPLLR 390
            +                  T AQ    N   AK+  + YV  N   N + + +N+  LR
Sbjct: 359 LWVAGASDTDESAAEKDADPTKAQKNKQNYTPAKWDIQKYVTTNSFINNDKSNVNWYFLR 418

Query: 391 YSDVLLMLAEAENH-LNGPTALAYDAINQVRRRGYGVDAATA 431
           Y+DVLL+ AEA N   +GP A AY+AIN VRRRGYG  + T+
Sbjct: 419 YADVLLLYAEALNEWKHGPDAEAYNAINAVRRRGYGNPSNTS 460



 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 2/99 (2%)

Query: 570 TTAVDL-SGLSQSSFQQAIEDERSRELCFEALRKPDLIRWGKWVETMNSIGAEIRANAGA 628
           T+A DL  GL ++SF++A+  ERS EL FE  R+ DLIRWG + +T+ +   E+      
Sbjct: 459 TSACDLPQGLDETSFREAVRKERSYELSFEGHRRQDLIRWGIYYKTVQATAKELGYWWEG 518

Query: 629 TFSYG-GLAGSNVLSKHQLFPIPAAEITVNKQATQNPGW 666
           T S    +A      KH+LFPIP  ++ +  Q  QNP W
Sbjct: 519 TGSPNYSVATYTEEGKHELFPIPQRDMDLCIQFNQNPKW 557