Pairwise Alignments

Query, 191 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 84.7 bits (208), Expect = 9e-22
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 14/168 (8%)

Query: 26  FEELYNRYWKKTLSLAVHKSGDLNEAENIVQDIFVSLWNRREVLVINTSFNNYLFVSVKY 85
           F +LY  Y+ + +  A    G + +AENIVQD F+ LW R+E+L      + YLF +VK+
Sbjct: 17  FSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLFSAVKH 76

Query: 86  RVIKFLDKLRSIRIYQENMA-----------VSADVLDDSTQQYLDFEELRDRLEKLICA 134
           R + FL    SI   ++ ++            S  +LDDS    +  +E+  ++ + I +
Sbjct: 77  RCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDS---QMSIDEVEKQICRAIDS 133

Query: 135 LPEKTSLIYRMNKDEGMSHREIAQSLNMTEKAVNSQLVRTKKILRAGL 182
           LPE+   I+ M+K +GM +REIA+SL +++  V  Q+    + LR  L
Sbjct: 134 LPERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREEL 181