Pairwise Alignments

Query, 616 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  138 bits (347), Expect = 1e-36
 Identities = 96/373 (25%), Positives = 190/373 (50%), Gaps = 6/373 (1%)

Query: 246 TRILVIIKDITEQVNFKKELLK-AKDILKIAMDASEMGSWNIDLESKQVLLSERAQQIYE 304
           +R   + +++T  +   +  L+ +++ L +A+  S  G W++DL++  +  S RA +I  
Sbjct: 346 SRAQAMAEEMTRHIRQSRHDLRLSEERLSLALKGSNDGLWDLDLDAGSMYASPRAWEILG 405

Query: 305 LESNRL--GIEEAKSLISLEDIGHLTSSIRRALHLRSAFNVEYQINLNGISAKSKWLRTA 362
              N L   ++  + +   ED+    + + + + L +  +   ++ L         +   
Sbjct: 406 YRPNELTCDLKLWERVTVAEDLAQQKARLAQTM-LSNVDHFTTELRLQHKHGHVVPVLLR 464

Query: 363 GKAYYNEEGKAVYIAGAVLDITEHKQDEIRKNDFIGMVSHELKTPLTSLSAYIQLLQYKF 422
           G    + +G A  I+G ++D+TE K+ E  KNDF+  VSHEL+TPLTS+S  + L+    
Sbjct: 465 GYIQRDAQGMAQRISGTLMDLTERKRVEQMKNDFVSTVSHELRTPLTSISGALGLIVGGA 524

Query: 423 KETDNDFTIQILDKVNVQLKRMSLMIDGFLNVSLLESGKILLNKTNFNLVDLIKTIAEEN 482
             +      Q+L+       R+  +I+  L++  + +GK+       +L DL++     N
Sbjct: 525 LGSAPASMQQMLEIAYRNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGDLLEESLASN 584

Query: 483 RTVLPSHFIQVIGSE--EMIVYADMEKIGNVINNLIGNAAKYSKKESLIAIKCEIQKGYV 540
           + +   H I+       +++V+ D  ++  V+ N + NA K++ +   I +   ++   V
Sbjct: 585 QALCEQHGIRCSLDHPVDVLVWVDGMRLQQVLGNFLSNAVKFTPQGGEIRLHSSLRGPRV 644

Query: 541 IVSVEDEGIGIKENDIPRLFDRFYRVESPDTKTIAGFGVGLYICAEVIERHEGKIWVESK 600
            +SV D+G GI E    R+F++F + ++ D++  +G G+GL I  E+IER  G +  +  
Sbjct: 645 RISVTDQGPGIPEAFRSRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCP 704

Query: 601 FGEGSTFYFSLPI 613
            G+G+TF+  LPI
Sbjct: 705 PGQGTTFWCELPI 717