Pairwise Alignments

Query, 617 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 986 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  101 bits (251), Expect = 2e-25
 Identities = 102/389 (26%), Positives = 177/389 (45%), Gaps = 45/389 (11%)

Query: 247 DLGDQLMAKDETLAVNQYKR--------GLAIADKNGFLIYSKILARKLFDFYTLKGDNS 298
           D+ DQ +AK E L   +Y           + I D  G +      A ++F +       S
Sbjct: 617 DVTDQALAKAEMLERERYLSMLLDNVIDAIIIIDARGIIETFNHAAEQMFGY-------S 669

Query: 299 TAAIYSHKLILLQEEQDKINNISSVD-YLDYALKEQQIDALVERSKYQNTLLVITAIACL 357
           +A +    L +L  E D+    S+ D YLD+  +     AL +  +   T L        
Sbjct: 670 SAEVLGQNLSMLMPEPDR----SAHDGYLDHYTQRGTSRALEQNREL--TALRRNGDTFT 723

Query: 358 LALAVIIVIRKNLKRIHKLNEQMANQNNQMRETLNALEQSQADNTNMLKIVAHDLRSPIA 417
           + L V  +     ++   L   +  +          +E+ +++   ++ IV+H+LR+P+ 
Sbjct: 724 IELRVSQISHHGERKFIGLVRDITERKR--------IERMKSE---LVSIVSHELRTPLT 772

Query: 418 GIYSITSLMIEERGRSDGD-----QKMLRVIQSSSKDSLELVNDLLQTQFKTE---MLSK 469
            I     L++   G + G+     ++ML +   +S     LV+DLL           L+ 
Sbjct: 773 SISGALGLIV---GGALGEPSPSMRQMLDIAHQNSLRLGRLVDDLLDMDKLVAGKMALAL 829

Query: 470 QPIDLAEMLRYCVSLLQSNIEAKGQHLILHVKPVI-LLASREKLWRVISNLITNAIKFSP 528
           +   L   L+  V   Q         L L   P + L+A  ++L +V++NLI+NA+KFSP
Sbjct: 830 RAHSLQVQLQLAVGANQGYAAQHRVQLELLPTPSLQLMADDDRLQQVLANLISNAVKFSP 889

Query: 529 NEATIEVRMEEGAGYLRIGVADEGIGIPVEIEDKIFDMFTEARRPGTAGEQPFGLGLAIS 588
            + T+ +  E    ++RI V D+G GI  E   +IF  F++A    T  +   GLGLAIS
Sbjct: 890 QDGTVRLGGERRGDWVRIWVRDQGPGIAPEFRARIFQKFSQADSSDTRQKGGTGLGLAIS 949

Query: 589 RQIVKAHGGKIWFERKPVSGTIFFIELPV 617
           +++++   G+I F+ +P  G  F+ ELP+
Sbjct: 950 KELIEHMHGRIGFDSEPGHGACFWCELPL 978