Pairwise Alignments

Query, 513 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 524 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.0 bits (149), Expect = 5e-14
 Identities = 97/368 (26%), Positives = 150/368 (40%), Gaps = 58/368 (15%)

Query: 148 SSLQDADRRRYKAEAVFLRNLSYMFICKLF--GDAV--------YYTEAYHSTPLARTPQ 197
           S  +  + R +++EA F+R+ SY  +  L+  G  V        Y  EAY    +    +
Sbjct: 135 SEAEQTEIRTFRSEARFMRSFSYWMVLDLYRQGPKVDENTPVIGYIPEAYDGIGMFDFIE 194

Query: 198 VEVMKKCIADMTAAKADLPTTYNDVSSNGFRPTKATAVALLMHLNMWAAAWDNENKTKYY 257
            E +K+ +A+  ++       Y        R +K  A ALL  L + +A +     TKYY
Sbjct: 195 SE-LKELVAEGVSSALPATNEYG-------RASKPVAWALLARLYLNSAIYRGNVDTKYY 246

Query: 258 EAVKTLATELDTYTNYKLLPITSENTLKIFKG----RSSENLFGILQD----FNYGEGFS 309
               T   ++ +   + L P       K+F      R+ E LF ++ D      +G G  
Sbjct: 247 TECITACKQVISNPAFYLEP----EYAKLFNADNHKRTHEILFAMVCDATTSVTWGGGTY 302

Query: 310 L------------PA--GFSYYFSHYPYRGTVTKTASSMAYNKDYISKLYPAGIPDARLT 355
           +            PA  G S  +  +  RG +T     +A  KD  +  Y  G      T
Sbjct: 303 IICGSCGNSSTQDPAKYGLSNGWGMFRARGEMTAKFGDIATTKDSRAMFYTDGQAQF-FT 361

Query: 356 NWFENYDSGTGTFQFKKFANIYTTG---SGSAISVTSDDSAIIFRLPDCYLLTAEALAEL 412
              +N   G   + F+KF+N+   G   S SA +  S D  ++ RL D YL+ AEA    
Sbjct: 362 GAIDNQAEG---YFFEKFSNLTDEGVAASNSAATGCSTDYPLL-RLADIYLMAAEAQLRG 417

Query: 413 G---DEGGARDFTNRVREAA--AAPPIVLSGQDLK-DEIYRERCRELIGEGQFFFDLVRT 466
           G       A +  N+VR  A        +S  D   D I  ER REL  E     DL+R 
Sbjct: 418 GTGLSRAEALELVNQVRLRAYNQDESGKISDSDFTLDFILDERARELYLESVRRTDLIRF 477

Query: 467 KRVVNSDF 474
            + V++D+
Sbjct: 478 NKFVSADY 485