Pairwise Alignments

Query, 513 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 519 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 65.9 bits (159), Expect = 3e-15
 Identities = 119/560 (21%), Positives = 209/560 (37%), Gaps = 103/560 (18%)

Query: 11  AALVFTTAGCKKFLNVTPIEAQSGNNFWKTREEVEGFTNGIYARLRSKVAGTPQFFNGDD 70
           A     T+ C  +L+V P   Q    +WKT+E+VE      Y  +R  V           
Sbjct: 2   AGATLLTSSCNDWLDVLPKNEQVSPEYWKTKEQVEEVLAQGYQNMRLTV----------- 50

Query: 71  RAFFPAL----EIRGNSINVLSIDGDGANTFNALIGNNMKFIVSRGNRYDNLMKKIMSWK 126
               P L    E+RG SI   S  G            N +   S G            W 
Sbjct: 51  ----PTLIYWGELRGASIYAYS--GKSKQELQ-----NFQLNSSSGE---------CKWG 90

Query: 127 EWYDVIAASN--IMYFEIDKVPSSSLQDADRRRYKAEAVFLRNLSYMFICKLFGDAVYYT 184
            +Y ++  +N  I Y    K    +  +A      AEA F+R  +Y  + + F +     
Sbjct: 91  GFYSILNVANSIIKYAPEVKRQDETYHEAVMNSNMAEAYFMRAWTYFTLVRNFKEVPLIL 150

Query: 185 EAY----HSTPLARTPQVEVMKKCIADMTAAKAD--LPTTYNDVSSNGFRPTKATA---V 235
           E Y    ++  + ++ +  ++ +   D+  A +       Y+D    G    + T     
Sbjct: 151 EPYMTDEYAVDIPKSSEETIIAQIKLDIENALSTGAAKEMYDDEDWTGMSKGRVTVWALY 210

Query: 236 ALLMHLNMWAAAWDNENKTKYYEAVKTLATELDTYTNYKLLPITSENTLK----IFKGRS 291
           AL+  + +W+  +D          V+     +++ + ++  P   E+  +     F G S
Sbjct: 211 ALMADVCLWSEDYDG--------CVRYADMLINSTSAFR--PAFVEDPEQWYNIFFPGNS 260

Query: 292 SENLFGILQDFNYGEGFSLPAGFSYYFSHYPYRGTVTKTASSMAYNKDYISKLYPAGIPD 351
           + ++F +  D +  +     A  S Y S          T +S+ ++     +L+      
Sbjct: 261 NGSIFELNFDQSRNQSPDDDATASTYPSPSNVYPWTQSTVASLQFSNAMCKRLFDEQTDQ 320

Query: 352 ARLTNWFENY------DSGT--------GTFQFKKFANIYTTGSGSAISVT---SDDSAI 394
              +N    Y       SGT        G   FK     +  G    +S T    D + I
Sbjct: 321 WVTSNTVRGYGNTFVLSSGTVIGNSNTEGYLPFK-----FRIGGKDGLSTTRSYKDANWI 375

Query: 395 IFRLPDCYLLTAEALAELGDEGG---ARDFTNRVREAAAAPPI-----VLSGQDLKDEIY 446
           ++R+ D  L+ AEAL   G E     A +  N++R  A    +      +S +++   + 
Sbjct: 376 LYRMADVLLMKAEALIWKGGEANFAQALELINKIRTRANVTTLSVQTNAVSQENMLGYLL 435

Query: 447 RERCRELIGEGQFFFDLVRTKRVVNSDFTKSPISVANLN----AGAW---------TWPL 493
           +ER  E   EG+ ++DL+R  R  N  +    I++   N    + +W          W L
Sbjct: 436 QERDLEFAAEGKRWYDLLRFGRSQNFKYKDQFINMIIENNSTVSASWIRSVLKNTDAWYL 495

Query: 494 TISADERSANPYLIGNNFWN 513
            IS  E  +NP LI N +++
Sbjct: 496 PISQGEIDSNPNLIQNPYYD 515