Pairwise Alignments

Query, 513 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 621 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 60.1 bits (144), Expect = 2e-13
 Identities = 63/262 (24%), Positives = 105/262 (40%), Gaps = 46/262 (17%)

Query: 5   KYIILFAALVFTTAGCKKFLNVTPIEAQSGNNFWKTREEVEGFTNGIYARLRSKVAGTPQ 64
           K IIL A +    + C  FL+  P+       F   RE+VE + N +Y  L +      Q
Sbjct: 4   KIIILTAFMGLMLSACSDFLDRKPLTQPDNTTFLSGREQVENYINALYPALPAPA----Q 59

Query: 65  FFNGDDRAFFPALEIRG---NSINVLSIDGDGANTFNALIGNNMKFIVSRGNRYDNLMKK 121
           +  G          +RG   NS N+L+   D                  R N  +NL   
Sbjct: 60  YGMG----------VRGEEVNSDNILAEKYD-----------------MRLNGENNLFSG 92

Query: 122 IMSWKEWYDVIAASNIMYFEIDKVPSSSLQDADRRRYKAEAVFLRNLSYMFICKLFGDAV 181
              WK+ Y+ +   N  +F    VP    + A+ +  + EA FLR   + ++   FGD  
Sbjct: 93  SSDWKKGYENLRDVN-YFFYYYCVPEIE-ETAEIQSLRGEAYFLRAYWHFYLLTRFGDIP 150

Query: 182 YYTEAYHST------PLARTPQVEVMKKCIADMTAAKADLPTTYNDVSS----NGFRPTK 231
              + +          +  T + +V +  ++D+ AA  +LP T   + S     G R  K
Sbjct: 151 IMDDFWDGNATVAGLQIPATKRSDVARFILSDLKAAIGELPETRASLFSRSKYQGLRINK 210

Query: 232 ATAVALLMHLNMWAAAWDNENK 253
             A+ L M + ++  +W+  +K
Sbjct: 211 EAAIILAMRVALYEGSWEKYHK 232



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 11/88 (12%)

Query: 389 SDDSAIIFRLPDCYLLTAEALAELG--DEGGARDFTNRVREAAAA--------PPIVLSG 438
           S+ + I+FR  +  L  AEA AEL   D+  A      +RE A          P    +G
Sbjct: 441 SETAIIMFRYAEGLLCYAEAAAELNKYDDNVAAKTIKALRERAGVKYITPTTDPNFPFTG 500

Query: 439 -QDLKDEIYRERCRELIGEGQFFFDLVR 465
              +  EI RER  EL  +G    DL+R
Sbjct: 501 ISPVIQEIRRERRSELALQGFRLDDLMR 528