Pairwise Alignments

Query, 513 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 503 a.a., Outer membrane binding protein for (+)-arabinogalactan (SusD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  279 bits (713), Expect = 2e-79
 Identities = 195/530 (36%), Positives = 275/530 (51%), Gaps = 46/530 (8%)

Query: 1   MKNIKYII-LFAALVFTTAGCKKFLNVTPIEAQSGNNFWKTREEV--EGFTNGIYARLRS 57
           MKNI  I+ L  + +F  AGC    N +  +  SG++FW    E   E F   IY   R+
Sbjct: 1   MKNIVLIMTLIVSCLF--AGCDSLANKSE-DKLSGDDFWAQGNETNAEAFLLSIYNSFRN 57

Query: 58  KVAGTPQF--FNGDDRAFFPALEIRGNSINVLSIDGDGANTFNALIGNNMKFIVSRGNRY 115
                  F  ++GD         +R   I   S      + + A + NN    +      
Sbjct: 58  ATMSQRPFLTYSGD---------MRCAPITAYST----GDKYVAYLANNDMGELRNTYPD 104

Query: 116 DNLMKKIMSWKEWYDVIAASNIMYFEIDKVPSSSLQDADRRRYKAEAVFLRNLSYMFICK 175
           D     IM W  +Y  I  +NI+  EIDKVP   + +  R R+KAEA+F+R+LSY FI +
Sbjct: 105 DARGGLIMQWDVFYTAIQDANILLAEIDKVPG--MDELKRSRFKAEAIFMRSLSYFFIVR 162

Query: 176 LFGDAVYYTEAYHSTPLARTPQVEVMKKCIADMTAAKAD------LPTTYNDVSSNGFRP 229
            FGD  YYT AY+  PL RT  V V++ C+AD+     D      LP +Y+  SS G R 
Sbjct: 163 AFGDVPYYTNAYNEAPLPRTNMVIVLQNCLADLQPLLDDDPGAEVLPWSYSSYSSKGIRA 222

Query: 230 TKATAVALLMHLNMWAAAWDNENKTKYYEAVKTLATELDTYTN-YKLLPITSENTLKIFK 288
           ++ + +AL+MH+N+W   +D +NK +YY  V +L  EL+     Y LL I   +   IF 
Sbjct: 223 SRGSVIALMMHINLWLVQFDAQNKEQYYRNVVSLGEELERNNGAYSLLDINRSSV--IFA 280

Query: 289 GRSSENLFGILQDFNYGEGFSLPAGFSYYFSHYPYRGTVTKTASSMAYNKDYISKLYPAG 348
           G S E LF I Q+ N+ E F + A FS   S+      + K+     Y+ DY+  L+P  
Sbjct: 281 GGSDEGLFEIAQNINFNEIFMMNAKFSDNVSY----SCLNKSMPLFCYSGDYLMTLFPMY 336

Query: 349 IPDARLTNWFEN--YD---SGTGTFQFKKFANIYTTGSGSAISVTSDDSAIIFRLPDCYL 403
             DAR   WF+   Y    S +   + KKF NI T G+G+  S  +  + I+FR     L
Sbjct: 337 EDDARKELWFDEKIYSTSVSSSAPKEIKKFWNIDTYGNGTITS--NSGNQIVFRYAGALL 394

Query: 404 LTAEALAELG-DEGGARDFTNRVREAAAAPPIVLSGQDLKDEIYRERCRELIGEGQFFFD 462
           L AEALA LG ++  A +  NRVR  A A  I  SG +L D I+ ERCRELIGEG +++D
Sbjct: 395 LYAEALAALGTNDTKACELLNRVRNRAHASEINTSGSELMDAIFWERCRELIGEGHYYYD 454

Query: 463 LVRTKRVVNSDFTKSPISVANLNAGAWTWPLTISADERSANPYLIGNNFW 512
           LVRT +V N ++  +P++  N N GAWTWP+  +A + +    L  N FW
Sbjct: 455 LVRTGKVYNRNYCMNPMTRTNFNVGAWTWPIHRNALKNNTQIGL--NLFW 502