Pairwise Alignments

Query, 513 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 463 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 57.8 bits (138), Expect = 8e-13
 Identities = 106/473 (22%), Positives = 184/473 (38%), Gaps = 75/473 (15%)

Query: 8   ILFAALVFTTAGCK-KFLNVTPIEAQSGNNFWKTREEVEGFTNGIYARLRSKVAGTPQFF 66
           ILF A  F +  C   F ++ P  +   +  +KT ++      G Y++L+ +V+      
Sbjct: 7   ILFLATAFVSVACTDSFFDLEPSSSVPTDKVYKTADDFNVAVIGCYSKLQGQVS------ 60

Query: 67  NGDDRAFFPALEIRGNSINVLSIDGDGANTFNALIGNNMKFIVSRGNRYDNLMKKIMSWK 126
                 F    E R ++   LS+    A T +    +      S G     +++   +W 
Sbjct: 61  -----YFTECCEYRSDN---LSLSAPTAGTQDRYDIDQFADKASNG-----ILES--AWA 105

Query: 127 EWYDVIAASNIMYFEIDKVPSSSLQDADRRRYKAEAVFLRNLSYMFICKLFGDAVYYTEA 186
            + + +   N++   +DK+ ++      +++YK EA+F+R L+Y  + +L+G      + 
Sbjct: 106 NFNNGVYRCNLV---LDKIDAADFDATLKKQYKGEALFVRALTYFNMYRLWGGIPMTDKV 162

Query: 187 Y---HSTPLARTPQVEVMKKCIADMTAAKAD--LPTTYNDVSSNGFRPTKATAVALLMHL 241
                +  + R+ + +V      D+     +  LP++Y    +   R T   A+ALL  +
Sbjct: 163 VTVAEALKIGRSSEQQVFDFLTGDLNQVINENMLPSSYTGTDTG--RATSGAAMALLGKI 220

Query: 242 NMWAAAWDNENKTKYYEAVKTLATELDTYTNYKLLPITSENTLKIFKGRSSENLFGILQD 301
            +    W         EA   L+  +     Y L+P T +    +    + E +F +   
Sbjct: 221 YLTFHKWT--------EARNVLSQLIG---RYSLMP-TPDKVFDVDNKMNDEIIFAV--R 266

Query: 302 FNYG-EGFSLPAGFSYYFSHYPYRGTVTKTASSMAYNKDYISKLYPAGIPDARLTNWFEN 360
           FN   EG     G  Y+FS         +T +        + + Y  G     L  + + 
Sbjct: 267 FNKDVEG----EGHGYWFSIINLTDDTNQTKA--------LKECYKDGDKRKDLITYVKV 314

Query: 361 YDSGTGTFQFKKFANIYTTGSGSAISVTSDDSAIIFRLPDCYLLTAEALAEL----GDEG 416
            D      +FK           SA   T  +  II R  D  L+ AEAL E+        
Sbjct: 315 EDKVCVMNKFKDLK--------SATYNTVGNDQIILRYADVLLMYAEALNEISYSNSQTS 366

Query: 417 GARDFTNRVREAAAAPPI---VLSGQD-LKDEIYRERCRELIGEGQFFFDLVR 465
            A    N V   A   P+    L+ QD  +  I  ER +E   EG  +FDLVR
Sbjct: 367 DAMVALNAVHTRAGLSPVQITELADQDSFRKAIMLERQQEFPYEGHRWFDLVR 419