Pairwise Alignments

Query, 520 a.a., L,D-transpeptidase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 472 a.a., peptidoglycan binding domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  108 bits (269), Expect = 6e-28
 Identities = 82/284 (28%), Positives = 132/284 (46%), Gaps = 53/284 (18%)

Query: 227 LNMERFRWKMPETGDNYVQVNIPDFRLTWLDKTDTVITMKVCVGGKRENGYEDKLKAFAK 286
           L   R R  +P T   YV VNIP F L  +D  + ++  +V VG                
Sbjct: 230 LLQSRERQTLPST---YVLVNIPAFDLELVDDGEALMHSRVIVG---------------- 270

Query: 287 SGNLDDKPKNHETPLLFSKINSIQANPIWNIPVSIAQSEIYWMARKDPYYLSNSNIKVYY 346
                 KP + +TP + S+I+++  NP W +P  + + ++    RKD  YLS     V+ 
Sbjct: 271 ------KP-SRKTPFIQSEISAVVVNPSWRVPRRLMRLDVLPKVRKDGSYLSRKGFIVWS 323

Query: 347 KD-KLIGEPDTINWNRYSRDKLPFKFKQGSGGGNALGKFKFIFDNSSSIYLHDTNNKNGF 405
           ++ + + E D   +   +  K P+  +Q  G  NALG+FK  F N  ++YLHDT +K+ F
Sbjct: 324 REGEEVKETDDF-FQSAAAGKFPYLLEQRPGPDNALGRFKLHFANEDNVYLHDTPDKHLF 382

Query: 406 NLSNRAISHGCVRIEKPLEFAELLVKDSYTYDKLRAEVDLPPIDSTHVKWYKKRMAQKAD 465
           +   RA+S GCVR+EK  E +  L        +               +W +        
Sbjct: 383 DEPMRALSSGCVRVEKINELSAWLANGRLADPR---------------RWQQ-------- 419

Query: 466 TLKTFQLKPAWFAPKKNVPLIITYITAWAQND-RIEYRPDVYGM 508
           TL+T Q    WF  K+ +P+   Y T+W   + + ++R D+YG+
Sbjct: 420 TLQTPQ-TTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGI 462