Pairwise Alignments

Query, 520 a.a., L,D-transpeptidase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 536 a.a., Peptidoglycan-binding domain 1 protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  122 bits (307), Expect = 3e-32
 Identities = 89/305 (29%), Positives = 138/305 (45%), Gaps = 50/305 (16%)

Query: 214 LNADAESEKRILLLNMERFRWKMPETGDNYVQVNIPDFRLTWLDKTDTVITMKVCVGGKR 273
           +N +     + +++ +ER RW   E G  ++ VNIPDF    ++    V   +V VG   
Sbjct: 268 INTEPTERLKSIIVGLERERWMNFELGPRHIMVNIPDFHARVMENGKEVFATRVVVGK-- 325

Query: 274 ENGYEDKLKAFAKSGNLDDKPKNHETPLLFSKINSIQANPIWNIPVSIAQSEIYWMARKD 333
                          N  D+     TP    +++ +  NP WN+P SIA  E     +++
Sbjct: 326 ---------------NTSDR----RTPEFSDEMDHMVINPTWNVPRSIATKEYLPKLQEN 366

Query: 334 PYYLSNSNIKVYYKDKLIGEPDTINWNRYSRDKLPFKFKQGSGGGNALGKFKFIFDNSSS 393
           P   S   + V    + +   + +++ +++    PF  KQ     NALG  KF+F N  +
Sbjct: 367 PNAHSYMRL-VDASGRTVNRAE-VDFTQFNARSFPFDIKQPPSNRNALGLVKFMFPNKHN 424

Query: 394 IYLHDTNNKNGFNLSNRAISHGCVRIEKPLEFA-ELLVKDSYTYDKLRAEVDLPPIDSTH 452
           IYLHDT  K+ F   +RA SHGCVR+  P +FA ELL K                 +   
Sbjct: 425 IYLHDTPAKSLFGRESRAYSHGCVRVADPFDFAYELLSKQ----------------ERDP 468

Query: 453 VKWYKKRMAQKADTLKTFQLKPAWFAPKKNVPLIITYITAWA-QNDRIEYRPDVYGMDEK 511
             ++K  +A+  +T         W    K VP+ + Y TA+A      +YR DVYG D +
Sbjct: 469 EGFFKTTLAKGKET---------WVYLDKPVPVHLVYQTAFAPAKGNTQYRRDVYGRDAR 519

Query: 512 LWVAM 516
           LW A+
Sbjct: 520 LWDAL 524