Pairwise Alignments

Query, 1477 a.a., DNA polymerase III subunit alpha from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1185 a.a., DNA polymerase III subunit alpha from Bifidobacterium breve UCC2003

 Score =  639 bits (1647), Expect = 0.0
 Identities = 420/1227 (34%), Positives = 653/1227 (53%), Gaps = 130/1227 (10%)

Query: 261  FVHLHNHTQFSVLQSTISIPDLVKAAAAQKMPAVAMTDHANMMGAFHFVNNVLNHNKAAE 320
            FV LHNHT +S+L     IPDL K AA  +MPAV +TDH NM GA+    N + +     
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCVANG---- 63

Query: 321  AKNAAAIEAGERPTEVVMTPIVGVEFFVCNN--HLDRTAKDNGYQ--------------- 363
                             + PI+G+E +V       D++    G +               
Sbjct: 64   -----------------VKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITH 106

Query: 364  MVLLAKNKKGYHNLAKMSSIAYTKG-FYYVPRIDREVIEQYKDDIIVLSGNLSGEISNKI 422
            + + A+N +G  NL K SS+A  +G     PR+D+EV+  Y   +I  SG  SG I  + 
Sbjct: 107  LTMWAENDEGLVNLIKASSVANLEGRVMRYPRMDKEVLSTYSKGVIASSGCPSGIIQTR- 165

Query: 423  LNMGE-SQAEEALIWWKNMFG-DDFYVEVMRHNQEDEDRVNESLIALARKHAVKLVATNN 480
            L +G+  +A  A   ++++FG D+F++E+M H    E++V + L+ +A+K    L+ATN+
Sbjct: 166  LRLGQFDEALRAAGEFQDIFGKDNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATND 225

Query: 481  TYYINKKDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKSLFADLPE 540
            ++Y++ +DA A D +LC+  G +   P       R+      YY K+ +EM+ LF D P+
Sbjct: 226  SHYVHAEDAGAQDAMLCINSGSRLDDPD------RFKFDGTGYYIKTAEEMRELFKDHPD 279

Query: 541  AIVNIKEIVDKIEIYKLARE--VLLPKFDIPEEFLVAEDEADGGKRGENKFLRHLTYEGA 598
            A  N   I ++  +     E    +P+F  PE +    DE        + FL+ +  EG 
Sbjct: 280  ACDNTLLIAERCNVMFDDHEDGAFMPQFPCPEGW----DET-------SLFLKKVE-EGL 327

Query: 599  KKRYGVLTP-EVTERLDFELQTIEKTGYPGYFLIVQDFIAEARRRDVSVGPGRGSAAGSV 657
            +KRY    P  V ++ D+E   I +  + GYFL+V D+I  A+   + VGPGRGSAAG++
Sbjct: 328  EKRYNGNPPLNVLKQADYECGVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAM 387

Query: 658  VAYCLWITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMEYVIGKYGSSQVAQ 717
            VAY + IT +DP+K+ L+FERFLNP+RVS+PDID+DFD EGR RV+EY   KYG+ +VAQ
Sbjct: 388  VAYSMGITELDPLKHGLIFERFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQ 447

Query: 718  IITYGTMAAKSSIRDTARVLDLPLFEADKIAKLIP-------NMKLAKIFTLDEKTLKEA 770
             + YGT+  K +++D+AR++       +K+ K +P       ++ L  IF    K   EA
Sbjct: 448  CVIYGTIKTKQALKDSARIMGYEFSVGEKVTKALPPAATGGKDISLHDIFDPSAKRYAEA 507

Query: 771  LRPDEYERVVELKNLGGLKDLSAETI-QQAQILEGSLRNTGIHACGVIITPSDITNFVPV 829
                E+  + +        D  A+ I ++A+ +EG +R TG+HAC  I+  + IT+  P+
Sbjct: 508  ---REFREMYD-------SDPDAKRITEEAKGIEGLIRQTGVHACATIMGSAPITDTSPL 557

Query: 830  STAKDSDLYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKKRFGIDLDPDNFPID 889
                D  +  T F+    E+ GL+KMDFLGL  LT+I DT+K ++      +D    P+D
Sbjct: 558  LERTDGTI-TTTFEYHTCETLGLVKMDFLGLSNLTVIHDTLKNIEANGKPAIDYTKIPLD 616

Query: 890  DVLTYELFQRGETIGIFQYESPGMQKYMKELKPTVFDDLIAMNALYRPGP--MEYIPSFV 947
            D  TY+L  RG+T+G+FQ +S GM+  +K LKP  F+D+ A+ ALYRPGP  M+   ++ 
Sbjct: 617  DAETYKLMARGDTLGVFQLDSDGMRSLLKTLKPDNFNDISALIALYRPGPMSMDSHTNYA 676

Query: 948  RRKNGEEEIKYDLDACEEYLK----ETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMG 1003
            +RKNG ++I       EE LK    ETYG+ +YQEQV   ++ LAG++ G+ADVLR+AMG
Sbjct: 677  KRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAARILAGYSLGKADVLRRAMG 736

Query: 1004 KKQKDVLDKMKPKFVKQAAEKGHDATTLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAY 1063
            KK+ +VL K K  F     E G+       +W     F+ YAFNK+HS  Y  I+Y TAY
Sbjct: 737  KKKPEVLAKEKVPFFAGMKEHGYSEEAANAVWDILVPFSGYAFNKAHSAAYGLISYWTAY 796

Query: 1064 LKAHYPAEYMAAVLSNNMSDIKQVAFFMEECRQMSVTVLGPDVNESDLKFSVNAKGE-VR 1122
            LK HYP E+MAA+L    ++  + A ++ E R+M + VL PDVNES   ++ +A G+ VR
Sbjct: 797  LKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPDVNES--VYAYSAVGDVVR 854

Query: 1123 FGMSAVKGVGEKAVESIIEERLA-NGPYGNVYDFAKRSNTRIVNKKAYESFVYSGAFDAF 1181
            FG+ A++ VG+KAV  II ER    G + N  DF +R     +N++  ES + +GAFD+ 
Sbjct: 855  FGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALNRRLVESLIKAGAFDSI 914

Query: 1182 GGHRAQYFYIGPNDKMNGIEKIIKYANDFQNNESTSQASLF-----GGSKADLILEPSLP 1236
              +R   F +         E  I      +  ++  Q  LF     GG++A      ++P
Sbjct: 915  DPNRRALFTVH--------EAAIDSVVSLKRKQAEGQFDLFSDADDGGAEAMGDASVTVP 966

Query: 1237 VSPEWALMDRLKYEKDAIGIFLSGHPLDNYKLELDKFCTHGVKQLSIINKVRMGDNNEDI 1296
               EW    +L +E++ +G+++S HPL   +  L       +  L I     MG+  +  
Sbjct: 967  DIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHL-IDRAKTMGEGQQVT 1025

Query: 1297 LAEFEKLKNRELCVGGLVVTASQRITKTGKPFGTFVFEDYDDASEMALFGEDFLKFKSFL 1356
            LA             GL+    +R++K G P+     ED + + +   FG+ +    + L
Sbjct: 1026 LA-------------GLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYEAAAAEL 1072

Query: 1357 TEGYFLQIRGRVGERFGKAGDWEFKITAINL-MSELRDKLAKSLTIQVPIERVNDQLMRE 1415
                 +QIRG+V  R     D    + A  L +  L  +  + LTI +P   ++ Q M +
Sbjct: 1073 AVDAIVQIRGQVELR-----DETVSMRATELQVPTLESEDERPLTITLPHAALDRQHMMQ 1127

Query: 1416 IEAILADNKANSEQQNCQLNFAIFDRE 1442
            +  +L ++        C+++ A+ D +
Sbjct: 1128 LGQVLTNHPG-----YCEVHLAVMDEK 1149