Pairwise Alignments

Query, 464 a.a., radical SAM protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 543 a.a., radical SAM domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  158 bits (399), Expect = 5e-43
 Identities = 113/349 (32%), Positives = 172/349 (49%), Gaps = 28/349 (8%)

Query: 1   MANT--RDYIYYDYTKSLCPECLQLCDAKIVFQDAKVFMLKNCRTHGDSKVMI---ADDV 55
           MA+T  + Y    +T+SLCP CL    A+   +  +V+++K C  HG ++  +     D+
Sbjct: 1   MAHTEMKPYRVVHHTQSLCPRCLARIPARYEQRSHEVWLVKECPEHGRTETPVWRGGPDM 60

Query: 56  EYYKQIRNYNKQSEMPLKFNTKVHYGCPYDCGLCTDHEQHSCLTVIEVTDRCNLACPTCY 115
             + +     K    P    T V  GCP+DCGLC  H QH+C  V EVT RCNL C  C+
Sbjct: 61  STWLR----PKLPTPPAPLGT-VDRGCPFDCGLCPQHNQHTCTAVFEVTTRCNLRCRYCF 115

Query: 116 A---------MSSPSYGRHRTLAEIERMMDVVVANEGEPDVVQLSGGEPTVHPEFFKILD 166
           A         +   ++     L  +  +++ V    G P  +QLSGGEPT+  +   I+ 
Sbjct: 116 AAAQDDETQTLQPSAHVGDPPLHTLVALLEAVRQKTG-PCNIQLSGGEPTLRHDLCDIVS 174

Query: 167 LAKTKPIKHLMVNTNGIRIAKDINFVEKLASYMPDFEIYLQFDSFSAEVLTKLRGEDLTE 226
            A+ +    + +NTNGI + +  +    LA    D  ++LQFD  S ++   LRG  L +
Sbjct: 175 HAR-RLFPFVQLNTNGILLGRQPSLAHDLARAGLD-SVFLQFDGTSQDIHEALRGAPLLD 232

Query: 227 VRRKAIDHLNQFNVSTTLVVTLQNGLNDHEIGDILDYALK-QKCVRGVTFQPTQVAGRND 285
            +R+AID L +  V   LV T+  G+NDH++G I+   +     VRGV FQP    GR+ 
Sbjct: 233 DKRRAIDALGEAGVGVVLVPTVVPGVNDHDVGAIIRLGMSLAPAVRGVHFQPVSHFGRHP 292

Query: 286 DYN---DQQGRITLTEVRRKIYEQYP-IFTPQDLIPVPCNPDALCMAYA 330
                     RITL E+  ++ EQ   +    D +P  C   +LC  +A
Sbjct: 293 SCQGAPSPSARITLPELMHRLEEQTAGMVQVVDFLPPGCE-HSLCSFHA 340



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 405 NLFRIIIMNFMDPLDFDVRAVKKSCVHIVSDKYKMVPFETMN 446
           +LF I  M F D  + D+  ++  C+H V+    ++PF   N
Sbjct: 488 HLFAISAMAFQDAWNLDLERLQGCCIHAVTTDGALIPFCAWN 529