Pairwise Alignments

Query, 1040 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1048 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  482 bits (1241), Expect = e-140
 Identities = 344/1054 (32%), Positives = 523/1054 (49%), Gaps = 93/1054 (8%)

Query: 49   IKGKIIDEKGLALPGATITVKGTKKAAGTDNNGQFSIEANPGDVLVITFT--GYTTREVT 106
            IKG ++D     + GA++ + GT     TD +G F+++  P +   I F+  GY  +++ 
Sbjct: 24   IKGIVLDFNNEPIIGASVYIPGTNTGVATDLDGNFTLKV-PANTKTIEFSYIGYE-KKII 81

Query: 107  VSSSDNINV----VLKENNS-DLEEVVVVGFGQQKKISVTAAISTVSSKELKQSPVANLN 161
              +  N+NV     +KE++   LE+V VV F +QKK SV  ++ST+   ELK +  +NL 
Sbjct: 82   EFNPKNLNVFRVVTMKEDSGIALEDVTVVAFAKQKKESVLGSVSTIKPAELKTTS-SNLT 140

Query: 162  NALVGRLPGLIGQQTSGDPGRDAATLLIRGQGTYNN--ASPLVLVDGVERT---FSTIDP 216
                G+L G++  Q SG+PG D A   IRG  T+    A PL+L+D VE T    S ++P
Sbjct: 141  TGFAGKLAGVVAYQRSGEPGEDNAEFFIRGVTTFGTGKADPLILIDNVELTSSDLSRLNP 200

Query: 217  NEVENISILKDASATAVYGVRGANGVILVTTRRGALGKTTVSITANNALQQPTRLPNYLD 276
            +++ + S+LKDA+ATA+YG RGANGVILVTT+ G  GK  +S  A ++   P++     D
Sbjct: 201  DDIASFSVLKDATATALYGARGANGVILVTTKEGTEGKMKLSFRAESSFSAPSKEVELAD 260

Query: 277  AYNYSLLLNEAYANEGKGLFYAYSQADLDGFKNHTDPYLYPDVDYMKEFLKPVAQQYNFN 336
               +  L NEA      G    Y ++ +   +   +PY+YP VD+     K     Y  N
Sbjct: 261  PLTFMKLHNEAARTRNPGNALPYLESAIAAREKGLNPYVYPMVDWKDMLFKDYTVNYRGN 320

Query: 337  ANVSGGTRIAKYFVSGSYFSQDGLYKHTGTNENAFNGDLNYSRYNFRSNVDLDVTPNLRI 396
             ++SGG R+A+Y+V+ SY   +G+ K    N   F+ ++  ++Y  RSNV++++T    +
Sbjct: 321  MSISGGGRVARYYVALSYSRDNGILKQVPNN--IFDNNIKLNKYTVRSNVNINLTKTTEL 378

Query: 397  STNLAARAETRNGPATSTSTLFSSLVAFPPNSAP-LTNPDGT--------YGYNFRQANV 447
            +  ++   ++  GP +  S ++S  +   P   P +  PD T        +G +   AN 
Sbjct: 379  AVRISGTFDSYQGPLSGGSAIYSQAIKASPVEFPAMYAPDETNINTKHVLFGNSGSSANY 438

Query: 448  L---AQFQSGFSKEYNNKLEGTVVLDYKLGSLLKGLSFKTNVSFTNEYTHTITRSYAD-Y 503
            L   A+   G+ +     +   + L    G +  GL+ +   + T    + +TRSY   Y
Sbjct: 439  LNPYAEMARGYKEYEKTVVLAQLELKQDFGFITDGLNGRLLANVTRNSYYDLTRSYTPFY 498

Query: 504  LKYKILGKNTDGTYIYSEAAG-------SYNPTLGFSQTFDPAVARTTYLEASLNYNNTF 556
                   K TD TYI S           SYNP          +V  + YLEASL+Y+ TF
Sbjct: 499  YSLDSYDKYTD-TYILSALNSDKGTDYLSYNPG-------SKSVDSSLYLEASLSYDRTF 550

Query: 557  GKS-TVTGLILGNRSRKIRNNAA---YDWPFSYQGIVSRVTYNYDDKYFIEGNLGYNGSE 612
             K   ++G+++         NA       P    GI  R TY Y D+Y+ E N GYNGSE
Sbjct: 551  YKKHNISGMMVYTVRESKSGNAQTLQLSLPSRNMGIAGRFTYGYSDRYYAEFNFGYNGSE 610

Query: 613  NFPTNKKYGFFPSISGGWVASNEGFLKP---AKWISLLKIRGSYGQVGNDKYGSETNTTD 669
             F  N ++GFFPS   GW+ SNE F K     K IS LK++GSYG VGND    E     
Sbjct: 611  RFDKNHRWGFFPSGGLGWMVSNEKFWKDKPITKVISSLKLKGSYGLVGNDNISDE----- 665

Query: 670  RFLFIQNSYATG-TGYSFGLTNNSAVT-GYVE-GAFGNPTVTWEKANKANIGLESAFLKN 726
            RF ++      G  G  FG   N+  + G +    + NP + WE ++K N+G E    K+
Sbjct: 666  RFFYLSEVSMDGDNGMGFGTNFNAKNSNGKISIKRYANPKIGWEISHKLNVGFEMKLFKD 725

Query: 727  KITLNVDLFYDKRSNILSRYGNIPTTFG-QTSPVVNLGIVENKGYEIELGHNNRINDFSY 785
             + +  + F ++R+NIL    +IPT  G Q SP  N+G  +  G +I L +++  N   +
Sbjct: 726  -LEIQAEYFKERRTNILQTRADIPTLMGFQVSPQANIGEAKGHGVDISLDYSHFFNKNLW 784

Query: 786  -TIKANLNYARNKIIFRDEAG-TKYPWMRRTGQSIGQQWGYQTAGFFNNQAEIDNWAKSS 843
             TI+ N  YA +K    +E   +  PW  + G  + Q++G      F ++ ++ N  K  
Sbjct: 785  ATIRGNFTYASSKFSKYEEPDYSATPWRSKIGTKLSQEFGLIAERLFVDEEDVANSPKQQ 844

Query: 844  FDPGPLGKLQPGDFKYIDQNADGIIDIYDQVPIGNPLIPVFTFGGTLSLSYKNFDFSLLL 903
            F     G+   GD KY D N DGIID  D+VPIG P  P   +G   S+ YK+FDF+   
Sbjct: 845  F-----GEYMAGDIKYKDINHDGIIDEQDRVPIGYPTTPEIIYGFGFSIGYKDFDFNCFF 899

Query: 904  QGAEKTSM----------IRTLEAGYEFFNKGK-------VMDLHLGRWTPETAAT-ATY 945
            QG+ ++S           I+  +   E   K         V D H   W+       A +
Sbjct: 900  QGSSRSSFFISPADISPFIQPNDPNNELGGKQATNALLQIVADDH---WSEANQNMYAFW 956

Query: 946  PRLSSSPNQSQHNYVDNDFFLIDASYLRLKSAELGFTLPTSWIQKIGLTNARLYANCFNL 1005
            PRLS +     +N   + ++L D ++LR+KSAE+G+TLP     K  L N R+Y +  NL
Sbjct: 957  PRLSDTA--ISNNNQKSTWWLRDGTFLRMKSAEIGYTLPKRISSKAKLENFRIYVSGTNL 1014

Query: 1006 YTWDKVNYLDPENRDVRAWYYPQQRIFNFGATVS 1039
            +   K    D E        YP QR+FN G  +S
Sbjct: 1015 FNISKFKTWDTE-MGGNGLGYPVQRVFNIGVQLS 1047