Pairwise Alignments

Query, 1040 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1033 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  567 bits (1461), Expect = e-165
 Identities = 344/1026 (33%), Positives = 535/1026 (52%), Gaps = 59/1026 (5%)

Query: 51   GKIIDEKGLALPGATITVKGTKKAAGTDNNGQFSIEANPGDVLVITFTGYTTREVTVSSS 110
            G ++DE G  + G  I ++GT   A TD +G F+I+A  G++L+ ++ GY  +++T    
Sbjct: 31   GLVVDENGQPMIGVQIKIEGTTVGAITDVDGNFTIKAQKGNILLFSYVGYEQQKITYKGE 90

Query: 111  DNINVVLKENNSDLEEVVVVGFGQQKKISVTAAISTVSSKELKQSPVANLNNALVGRLPG 170
              + + +  +   LE+VVV+G+G+QKK SV ++I+ +  KEL  S   N+ N L G++PG
Sbjct: 91   KVLAIKMLPSTEMLEDVVVIGYGKQKKNSVVSSINAIGPKELSVSSSRNMTNNLAGQVPG 150

Query: 171  LIGQQTSGDPGRDAATLLIRGQGTY-NNASPLVLVDGVERTFSTIDPNEVENISILKDAS 229
            LI  Q SG+PG D A   IRGQ ++    +PLVLVDGV R    I+ +E+E+ ++LKDA+
Sbjct: 151  LIAVQRSGEPGYDNADFWIRGQSSFKGGTNPLVLVDGVPRQMQDIEADEIESFTLLKDAA 210

Query: 230  ATAVYGVRGANGVILVTTRRGALGKTTVSITANNALQQPTRLPNYLDAYNYSLLLNEAYA 289
            ATAVYG  GANGVIL+T++RG   K  +S  A   + +PTRLP ++++     L NEA  
Sbjct: 211  ATAVYGAEGANGVILITSKRGNSQKPKISFRAEGTILEPTRLPTFMNSVETLNLYNEALN 270

Query: 290  NEGKGLFYAYSQADLDGFKNHTDPYLYPDVDYMKEFLKPVAQQYNFNANVSGGTRIAKYF 349
            NEG       +  ++  +    D  LYPD D++   L+       +  NV GGT  A+YF
Sbjct: 271  NEGTASI--RTDEEIAKYGPGADRDLYPDTDWLGTMLRNHTYNMRYTLNVRGGTERARYF 328

Query: 350  VSGSYFSQDGLYKHTGTNENAFNGDLNYSRYNFRSNVDLDVTPNLRISTNLAARAETRNG 409
            VSG+++ ++G++K  G   N ++ ++   RYN RSN+D D T    +  +L+ +    N 
Sbjct: 329  VSGAFYQENGIFKDFG---NDYDNNIGLKRYNLRSNIDFDATKTTTVKVDLSGQYLQTNY 385

Query: 410  PATSTSTLFSSLVAFPPNSAPLTNPDGTY-------GYNFRQANVLAQFQSGFSKEYNNK 462
            P T TST+F+++   P    P    DGT        G      N+L    SG++KE+   
Sbjct: 386  PGTGTSTIFTTMCRTPSYIMPAVYSDGTVAGHPRPSGNRSNPYNLLV--NSGYAKEWRTS 443

Query: 463  LEGTVVLDYKLGSLLKGLSFKTNVSFTNEYTHTITRSYADYLKYKILGKNTDGTYIYSEA 522
            ++  V +D KL  L KGL++K  +SF  + ++   R+     +Y   G++ +G  +Y   
Sbjct: 444  IQSKVEVDQKLDFLTKGLTWKGLISFDADMSYIAKRTKTP-TQYLATGRDENGKLLYKTV 502

Query: 523  AGSYNPTLGFSQTFDPAVARTTYLEASLNYNNTFGKSTVTG--LILGNRSRKIRNNAAYD 580
                +     S+    +  +  Y E + NYN TF +    G   +   +  +  NNA   
Sbjct: 503  VEGSDV---LSENLSNSSNKKIYFETAFNYNRTFAEKHDVGAMFLYMQKETQYHNNAL-- 557

Query: 581  WPFSYQGIVSRVTYNYDDKYFIEGNLGYNGSENFPTNKKYGFFPSISGGWVASNEGFLKP 640
             P+  QG+V RVTY YD +YF+EGN GY GSE F    ++GFFP++   W  SNE +   
Sbjct: 558  -PYRKQGLVGRVTYGYDGRYFLEGNFGYTGSETFAKGYRFGFFPAMGLAWYISNEHYYPE 616

Query: 641  A--KWISLLKIRGSYGQVGNDKYGSETNTTDRFLFIQNSYATGTGYSFGLTNNSAV---- 694
            A  K +S LK+R S G+ GND  G      +RFL+        +GY+ G +N+ A+    
Sbjct: 617  ALKKVVSKLKLRFSIGRTGNDDTGG-----NRFLYRGTMKQDNSGYNIGFSNSGALGGVG 671

Query: 695  TGYVEGAFGNPTVTWEKANKANIGLESAFLKNKITLNVDLFYDKRSNILSRYGNIPTTFG 754
             G  E  F +P ++WE  +K N G++     N+I L VD F +KR +IL +   +    G
Sbjct: 672  NGITEAQFESPFLSWEIEDKRNFGIDLGLFDNRIDLQVDYFNNKRKDILLQRNTVSNVTG 731

Query: 755  -QTSPVVNLGIVENKGYEIELGHNNRINDFSYTIKANLNYARNKIIFRDEAGTKYPWMRR 813
             Q  P  N GIV+N+G +  L  N ++ + + + + N  +ARN+I+  D+    YPW+ +
Sbjct: 732  FQQMPWQNFGIVKNQGVDASLNLNYKVGEVNLSARGNFTFARNEILEYDQVPQVYPWLEK 791

Query: 814  TGQSIGQQW------GYQTAGFFNNQAEIDNWAKSSFDPGPLGKL----QPGDFKYIDQN 863
             G  +   W      G  TA  FN   E  N  +    PG +  L    +PGD KY D N
Sbjct: 792  KGTRL-NSWKLYIADGLYTADDFNITGEGLN-RQYELKPGVVSGLSSGVRPGDIKYKDLN 849

Query: 864  ADGIIDIYDQV-PIGNPLIPVFTFGGTLSLSYKNFDFSLLLQGAEKTSMIRTLEAGYEFF 922
             DG ID  DQ+  +GNP +P   +G  L+  +K     +  QG+  TS +    +   FF
Sbjct: 850  GDGKIDSNDQMEDVGNPSVPEIVYGFGLNAEWKGAYVGIFFQGSGNTSTVLGASSNGAFF 909

Query: 923  ------NKGKVMDLHLGRWTPET-AATATYPRLSSSPNQSQHNYVDNDFFLIDASYLRLK 975
                   +  V      RWT +  +    +PR+ S+     +N   + ++L +AS+LRLK
Sbjct: 910  PFQWGVEESAVRSEVANRWTEQNPSQNVMFPRMHST--NYDNNTAASTWWLRNASFLRLK 967

Query: 976  SAELGFTLPTSWIQKIGLTNARLYANCFNLYTWDKVNYLDPENRDVRAWY-YPQQRIFNF 1034
            + E+G+      ++KIG+   R+Y    NL  WD +   DPE  +    + YP  R F F
Sbjct: 968  NIEVGYNFKEKTLKKIGIQALRVYLQGNNLCVWDDIKMWDPELGNTNGGFSYPLSRTFTF 1027

Query: 1035 GATVSF 1040
            G   +F
Sbjct: 1028 GLDFTF 1033