Pairwise Alignments
Query, 1040 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5
Subject, 1033 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 533 bits (1373), Expect = e-155
Identities = 338/1031 (32%), Positives = 532/1031 (51%), Gaps = 61/1031 (5%)
Query: 49 IKGKIIDEKGLALPGATITVKGTKKAAG--TDNNGQFSIEANP-GDVLVITFTGYTTREV 105
+ G ++DE+G L G ++ +KG K+ G TD +G+F I P G LV ++ GY TRE+
Sbjct: 25 VAGIVLDEQGQELIGVSVQIKG-KQGVGVVTDFDGRFKITGVPAGSTLVFSYIGYETREI 83
Query: 106 TVSSSD-NINVVLKENNSDLEEVVVVGFGQQKKISVTAAISTVSSKELKQSPVANLNNAL 164
+++ + LKE ++ +EVVVVG Q+K+SV AI+ V + Q+P +++N L
Sbjct: 84 KYTATKLKEKIALKEAVNEFDEVVVVGRDTQRKVSVVGAITNVDPAGI-QAPAVSVSNML 142
Query: 165 VGRLPGLIGQQTSGDPGRDAATLLIRGQGTYN-NASPLVLVDGVERTFSTIDPNEVENIS 223
GR+PG+I SG+PG + + IRG T+ ++S LVL+DG+E + +DP ++E+ S
Sbjct: 143 GGRVPGIIAVTRSGEPGNNFSEFWIRGMSTFGASSSALVLIDGIEGNINDLDPADIESFS 202
Query: 224 ILKDASATAVYGVRGANGVILVTTRRGALGKTTVSITANNALQQPTRLPNYLDAYNYSLL 283
ILKDASATAVYG RGANGV++VTT+RG GK V+ N R+P Y DAY Y+ L
Sbjct: 203 ILKDASATAVYGTRGANGVVVVTTKRGKAGKLHVNFKTNATYSYSPRMPEYADAYQYATL 262
Query: 284 LNEAYANEGKGLFYAYSQADLDGFKNHTDPYLYPDVDYMKEFLKPVAQQYNFNANVSGGT 343
NEA + G YS +L+ FK DP LYP+V++ LK + ++SGG
Sbjct: 263 ANEARSVRGDD--PVYSATELELFKTGLDPDLYPNVNWRDVILKDHVINNQHHLSISGGG 320
Query: 344 RIAKYFVSGSYFSQDGLYKHTGTNENAFNGDLNYSRYNFRSNVDLDVTPNLRISTNLAAR 403
+ A+Y++S + + L+K + + + ++NY +YNFR+N+D D+T +S NL A
Sbjct: 321 QSARYYMSLGILNSEALFKQ-DKSASKHDVNVNYHKYNFRTNIDADLTKTTLLSLNLEAV 379
Query: 404 AETRNGPATSTST--LFSSLVAFPPNSAPLTNPDG---TYGYNFRQANVLAQFQ-SGFSK 457
+T+N P T +S L+ S PP P+ +G YG N + + G++
Sbjct: 380 IKTQNAPGTGSSNKYLWESQANLPPTVVPVRYSNGQLPAYGTNLEDKSPYVRLNYMGYTT 439
Query: 458 EYNNKLEGTVVLDYKLGSLLKGLSFKTNVSFTNEYTHTITR--SYADYLKYKILGKNTDG 515
+ V L LG + +GLS + SF+ H + R + Y G+ DG
Sbjct: 440 NETYSTKINVGLSQDLGMITEGLSVRGLFSFSMNGAHIVDRHMNPEQYYADPKDGRYLDG 499
Query: 516 TYIYSEAAGSYNPTLGFSQTFDPAVARTTYLEASLNYNNTFGKS-TVTGLILGNRSRKIR 574
+ + T T A R Y EA+ NY F + VTGL R
Sbjct: 500 SLKTVRTVNKEDMT----ATQGSASNRELYFEAAANYKRLFNQDHRVTGLAHFYRQELTN 555
Query: 575 ----NNAAYDWPFSYQGIVSRVTYNYDDKYFIEGNLGYNGSENFPTNKKYGFFPSISGGW 630
N P YQ + R TY+Y D Y +EGNLGY GSENF ++YG+FPSISGGW
Sbjct: 556 VDWGNGVLVSIPKRYQALSFRATYSYKDTYLVEGNLGYTGSENFNKERRYGWFPSISGGW 615
Query: 631 VASN-EGFLKPAKWISLLKIRGSYGQVGNDKYGSETNTTDRFLFIQNSYATGTGYSFGLT 689
V + + + + + LK R S+G+VGND+ E RF ++ + G
Sbjct: 616 VPTQYDWYRNLLPFNNFLKFRASWGRVGNDRLKDENGNDIRFPYLT---------TLGNV 666
Query: 690 NNSAVTGYVEGAFGNPTVTWEKANKANIGLESAFLKNKITLNVDLFYDKRSNILSRYGNI 749
+++ TG E G+ + WE + K N G+++ F +K+ + VD F+ K ++I R NI
Sbjct: 667 SSTWGTGLAENRTGSMNLKWEVSTKTNFGIDARFFDDKVDMTVDFFHTKTTDIFQRRANI 726
Query: 750 PTTFGQTS--PVVNLGIVENKGYEIELGHNNRIN-DFSYTIKANLNYARNKIIFRDEAGT 806
P G ++ P N+G +++ G + L + + N D + T++ N +A N++I+ +++G
Sbjct: 727 PDEGGLSNVLPYANIGSMKSWGMDGTLAYTHTFNKDMALTVRGNFTHAENEVIYWEQSGV 786
Query: 807 KYPWMRRTGQSIGQQWGYQTAGFFNNQAEIDNWAKSSFDPGPLGKLQPGDFKYIDQNADG 866
YP+ +G Q G G F ++ +I + K +F + +PGD KY D N DG
Sbjct: 787 NYPYQSNSGVPYKVQRGLIALGLFKDEDDIKSSPKQTF----MDNYRPGDIKYKDVNGDG 842
Query: 867 IIDIYDQVPIGNPLIPVFTFGGTLSLSYKNFDFSLLLQGAEKTSMIRTLEAGYEFFN--K 924
ID D VP+ +P +G L +YK F S+L +G K + Y F N +
Sbjct: 843 KIDKDDVVPLNYSAVPFIQYGFALDWNYKAFRVSILFEGVSKVQYFQGGRGFYPFLNESR 902
Query: 925 GKVMDL---HLGRWTPETAA--TATYPRLSSSPN---------QSQHNYVDNDFFLIDAS 970
G ++++ RW P A P L+ +PN ++++N ++ F+L D
Sbjct: 903 GNLLEMVADPRNRWIPREYAEVNGIDPALAENPNAKFPRLTYGENKNNNQESTFWLADGK 962
Query: 971 YLRLKSAELGFTLPTSWIQ-KIGLTNARLYANCFNLYTWDKVNYLDPENRDVRAWYYPQQ 1029
YLRLK+ ++ + +W++ ++G+ +A L NL+ WDKV DP YP Q
Sbjct: 963 YLRLKNVDVSYRFTNNWLKSRVGVESATLSLIGENLHVWDKVKLFDPSQASGNGAEYPLQ 1022
Query: 1030 RIFNFGATVSF 1040
R++ ++F
Sbjct: 1023 RMYTLQLNLTF 1033