Pairwise Alignments

Query, 1040 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1125 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  508 bits (1309), Expect = e-148
 Identities = 337/1061 (31%), Positives = 538/1061 (50%), Gaps = 74/1061 (6%)

Query: 19   SSGLQAYGNTHFVPVTASTANIPGERSLKPIKGKIID-----EKGLALPGATITVKGTKK 73
            +SG+      + + + ++ A    ++S  P K +I+        G ++ GA++ +KG   
Sbjct: 87   NSGIDYVIKNNEIILKSAKAEAVQQKSQGPKKSEIVGVVVDANTGESIIGASVQIKGAAT 146

Query: 74   AAGTDNNGQFSIEANPGDVLVITFTGYTTREVTVSSSDNINVVLKENNSDLEEVVVVGFG 133
               T+ +G+F+I A P DV++I++ GYT +E+ + S   +++ L E+   LEEVV+  +G
Sbjct: 147  GVITNIDGKFTIMAAPSDVILISYVGYTPKEIKIGSRKVLSIDLNEDAKQLEEVVITAYG 206

Query: 134  Q-QKKISVTAAISTVSSKELKQSPVANLNNALVGRLPGLIGQQTSGDPGRDAATLLIRGQ 192
              QKK S+  ++ ++   ELK  P  NL+ A  GRL G+I  Q SG PG D A   IRG 
Sbjct: 207  TGQKKASMVGSVESIKPAELKV-PSTNLSTAFAGRLAGVIAVQKSGQPGADGANFWIRGV 265

Query: 193  GTYNNAS-PLVLVDGVERTFS---TIDPNEVENISILKDASATAVYGVRGANGVILVTTR 248
             T N  + PL+++DGV+ + S    +DP  +++ SILKDA+ATA+YG RGANGV++VTT+
Sbjct: 266  STMNGVTDPLIILDGVQVSSSDLNNLDPEIIDSFSILKDATATAMYGTRGANGVMIVTTK 325

Query: 249  RGA-LGKTTVSITANNALQQPTRLPNYLDAYNYSLLLNEAYANEGKGLFYAYSQADLDGF 307
             G  L K  ++      + QPT  P ++D   Y  L NEA  N+  G    YSQ  +DG 
Sbjct: 326  SGMNLDKPIINFRMEAQMSQPTSTPKFVDGATYMELFNEAVNNDNSG-DVLYSQDRIDGT 384

Query: 308  KNHTDPYLYPDVDYMKEFLKPVAQQYNFNANVSGGTRIAKYFVSGSYFSQDGLYKHTGTN 367
            +   +PY+YP+V++  E  K  +    FN N+ GG +   YF S S   + G+ K+   +
Sbjct: 385  RAGLNPYIYPNVNWYDELFKDASYSEKFNFNIRGGGKRVDYFSSISVNHESGMLKNRSKD 444

Query: 368  ENAFNGDLNYSRYNFRSNVDLDVTPNLRISTNLAARAETRNGPATSTSTLFSSLVAFPPN 427
              ++N ++   RYNF++N++  ++ + ++S  L  +      P      +F++ +   P 
Sbjct: 445  FFSYNNNIEIMRYNFQNNINAKLSNSSKLSLRLNVQLRDMTTPNQGVGAIFNNAMNTSPV 504

Query: 428  SAPLTNPDG------TYGYNFR-----QANVLAQFQSGFSKEYNNKLEGTVVLDYKLGSL 476
              P+  PD        +G   R     Q N +AQ  +G++K + + +   +  + KL  +
Sbjct: 505  EFPVYFPDDGETPYIKWGATERVNADYQTNPVAQAATGYNKGFQSTVIAALEFNQKLDFI 564

Query: 477  LKGLSFKTNVSFTNEYTHTITRSYADYLKYKILGKNTDG----TYIYSEAAGSYNPTLGF 532
             +GLSFK   SF N ++ +  +    + K+ + G   DG    TY  S     Y   L  
Sbjct: 565  TEGLSFKALASFKN-WSSSENKREGKWNKFALTGYEDDGNGGYTYTTSRIGDEYTTNLTA 623

Query: 533  SQTFDPAVARTTYLEASLNYNNTFGKSTVTGLILGNRSRKIRN-----NAAYDWPFSYQG 587
              T   +  R  YLE  +NY+ TFG+  V  +++ ++   + N     N     P   QG
Sbjct: 624  KNT--NSGDRRFYLEGMVNYSRTFGEHDVNAMLIYSQDELVNNTPGDGNFIGSLPQRKQG 681

Query: 588  IVSRVTYNYDDKYFIEGNLGYNGSENFPTNKKYGFFPSISGGWVASNEGFLKPAK-WISL 646
            + +R +Y Y  KY  E N+GYNGSENF    ++G FPSI+ G+  S E F KP K  +S 
Sbjct: 682  LAARASYAYAGKYMAEVNVGYNGSENFAKGHRFGLFPSIAAGYNISEESFFKPLKNVVSK 741

Query: 647  LKIRGSYGQVGNDKYGSETNTTDRFLFIQNSYATGTGYSFGLTNNSAVTGYVEGAFGNPT 706
            LK+RGS+G VGND+         RF+++      G G++ G+  N    G V   + N  
Sbjct: 742  LKLRGSWGLVGNDQING-----SRFIYMSQIDLGGKGFTTGVNQNVTYNGPVYQRYANED 796

Query: 707  VTWEKANKANIGLESAFLKNKITLNVDLFYDKRSNILSRYGNIPTTFGQTSPVV--NLGI 764
            +TWE   K N G++   L + + L  D+F + R +I    G  PT  G  +  V  NL  
Sbjct: 797  ITWEVGEKINFGVDLQ-LFHSLDLTFDIFRENRRDIFQEKGTTPTYMGTATTKVYGNLAA 855

Query: 765  VENKGYEIELGHNNRIN-DFSYTIKANLNYARNKIIFRDEAGTKYPWMRRTGQSIGQQWG 823
            + N+G+E+   +N + N ++  + K    YA N+I   DE+  KYPW  + G S  +   
Sbjct: 856  MRNQGFELAASYNKQFNKNWFVSFKGTFTYAHNEITQYDES-PKYPWQSKIGVSANKNAI 914

Query: 824  YQTAGFFNNQAEIDNWAKSSFDPGPLG-KLQPGDFKYIDQNA------DGIIDIYDQVPI 876
            Y   G F + A+I N  +       LG  + PGD KYI+ +       D + D  D V  
Sbjct: 915  YIADGLFIDAADIANHQQQ------LGAAVIPGDIKYINISRDWYGYDDNLTDTDDWVWA 968

Query: 877  GNPLIPVFTFGGTLSLSYKNFDFSLLLQGAEKTS-MIRTLEAGYEFFNKGKVMDLHLGRW 935
             +P +P   +G   S+ +KN DFS   QG  +TS M++      +   +  +  +   RW
Sbjct: 969  KHPGVPEIVYGFGPSIKWKNLDFSFFFQGIARTSFMVKDFHPFGDSMLRNVLSWVADERW 1028

Query: 936  TPETAAT-ATYPRLSSSPNQSQHNYVDNDFFLIDASYLRLKSAELGFTLPTSWIQKIGLT 994
            +P+   T ATYPRLS   N + +    + ++  + ++L+LK+AE+G+T            
Sbjct: 1029 SPDNQNTNATYPRLSRKTNNNNNKL--SSYWERNGAFLKLKNAEIGYT----------YK 1076

Query: 995  NARLYANCFNLYTWDKVNYLDPENRDVRAWYYPQQRIFNFG 1035
            N RLY +  NL T+   +  DPE        YP QR+FN G
Sbjct: 1077 NMRLYISGSNLMTFAPFDLWDPEQGGGSGLSYPTQRVFNIG 1117