Pairwise Alignments

Query, 1040 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1039 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  568 bits (1463), Expect = e-166
 Identities = 352/1012 (34%), Positives = 545/1012 (53%), Gaps = 42/1012 (4%)

Query: 47   KPIKGKIIDEKGLALPGATITVKGTKKAAGTDNNGQFSIEANPGDVLVITFTGYTTREVT 106
            K + GK++DE G  +P A+I V+G  +   TD +G F IE  P D LV++F G  T+ + 
Sbjct: 52   KKVTGKVLDEFGEPIPSASILVEGRSRGVITDLDGTFVIEVLPTDKLVVSFLGMETQTIL 111

Query: 107  VSSSDNINVVLKENNSDLEEVVVVGFGQQKKISVTAAISTVSSKELKQSPVANLNNALVG 166
            V    NI V ++   ++L+EV VV +G+Q+K SV  AI+TVS  ELK  PVA L++ L G
Sbjct: 112  VGKQTNIVVKMQPQTAELDEVTVVAYGKQRKASVIGAINTVSMNELKM-PVAKLSSGLAG 170

Query: 167  RLPGLIGQQTSGDPGRDAATLLIRGQGTYNNAS-PLVLVDGVERTFSTIDPNEVENISIL 225
            +L G++  Q SG+PG   A   IRG  T+   + PLVLVDGVER+   +D  ++ + SIL
Sbjct: 171  QLAGIVVMQRSGEPGA-GADFWIRGINTFGAGNKPLVLVDGVERSMDLVDVEDIASFSIL 229

Query: 226  KDASATAVYGVRGANGVILVTTRRGALGKTTVSITANNALQQPTRLPNYLDAYNYSLLLN 285
            KDA+ATA+YGVRGANG++L+TT+RG      ++         P R+P   +   +    N
Sbjct: 230  KDATATALYGVRGANGIVLITTKRGTESAPKINARVEYGFTNPVRMPELANTEQWINYYN 289

Query: 286  EAYANEGKGLFYAYSQADLDGFKNHTDPYLYPDVDYMKEFLKPVAQQYNFNANVSGGTRI 345
            +        L  A    +   + N+TDP LYP+VD+M+   K  +     N NV+GG+  
Sbjct: 290  DITLESSGRL--AIQPEEKAKYLNNTDPDLYPNVDWMQTLFKDFSNTTRVNINVTGGSPK 347

Query: 346  AKYFVSGSYFSQDGLYKHTGTNENAFNGDLNYSRYNFRSNVDLDVTPNLRISTNLAARAE 405
             +Y+V GS++S+  ++    ++++ ++  + Y++++FRSN+D++VT +  +S +L+ + E
Sbjct: 348  IRYYVGGSFYSEGSVFNI--SDKDRYDASMRYNKFSFRSNIDINVTSSTELSLSLSNQYE 405

Query: 406  TRNGPATSTSTLFSSLVAFPPNSAPLTNPDGTYGYNFRQANVLAQF-QSGFSKEYNNKLE 464
            T+N P  S S L++ ++   P + P    DGT        N       SG+S+++ N  +
Sbjct: 406  TKNRPYGSLSDLYAYMIRTSPIATPTIYSDGTLAKPSTGTNPYNSLNNSGYSQDFFNNAQ 465

Query: 465  GTVVLDYKLGSLL-KGLSFKTNVSFTNEYTHTITRSYADYLKYKILGKNTDGT--YIYSE 521
              + L      ++  GL      S+     HT+ R       Y   G++ +G   ++ S 
Sbjct: 466  SLISLTQDFSKMVTPGLKANVKFSWDAYNAHTLNRIVTP-STYYATGRDEEGNLDFVRST 524

Query: 522  AAGSYNPTLGFSQTFDPAVARTTYLEASLNYNNTFGKSTVTGLILGNRSRKIRNN--AAY 579
                Y        T   +  RT   EAS NY+  FG+    G +     R   +N    Y
Sbjct: 525  EGSDY-----MKLTRTNSGTRTINFEASANYDRLFGEKHRVGALFLFSMRNYTDNFPGNY 579

Query: 580  DWPFSYQ--GIVSRVTYNYDDKYFIEGNLGYNGSENFPTNKKYGFFPSISGGWVASNEGF 637
               F+++  GI  R TY+Y D+YF E N GYNGSENF  +K++GFFPS + G++ SNE F
Sbjct: 580  VDAFAHKNIGIAGRATYSYYDRYFAEFNFGYNGSENFAPDKRFGFFPSFAIGYMLSNEAF 639

Query: 638  LKPAK-WISLLKIRGSYGQVGNDKYGSETNTTDRFLFIQNSYATGTGYSFGLTNNS-AVT 695
              P +  I LLKI+GSYG++GND+ G       RF F         GY FG    S ++ 
Sbjct: 640  WDPLRSTIHLLKIKGSYGEIGNDQIGGNR----RFAFNSTMKEGQYGYIFGTNPGSGSIV 695

Query: 696  GYVEGAFGNPTVTWEKANKANIGLESAFLKNKITLNVDLFYDKRSNILSRYGNIPTTFG- 754
            G   G  GN  V+WEKA KAN+GLE   L +++   +D FY+KR+ I  +  ++P+  G 
Sbjct: 696  GISTGIPGNLNVSWEKAQKANVGLELG-LFDQLKFQLDYFYEKRTGIYIQQESVPSIVGL 754

Query: 755  QTSPVVNLGIVENKGYEIELGHNNRINDFSYTIKANLNYARNKIIFRDEAGTKYPWMRRT 814
              +  VNLG ++N+G++  + +  R ND+  + +AN  Y RNK ++ D+    +P+    
Sbjct: 755  NETQYVNLGEMKNQGFDGSMEYEQRFNDWYVSARANFTYNRNKKLYDDKPTPIWPYQSEA 814

Query: 815  GQSIGQQWGYQTAGFFNNQAEIDNWAKSSFDPGPLGKLQPGDFKYIDQNADGIIDIYDQV 874
            G +  QQ G    G F ++ +I N  K +F     G ++PGD KY D N D +ID YD+V
Sbjct: 815  GFAYRQQRGLIALGLFESEEDIANSPKQNF-----GNVRPGDIKYKDINGDNVIDAYDKV 869

Query: 875  PIGNPLIPVFTFGGTLSLSYKNFDFSLLLQGAEKTSMIRTLEAGY----EFFNKGKV-MD 929
             IG   +P   +G  +SL +K FD SL +QG    + I   +A Y         G++  D
Sbjct: 870  AIGYTDVPEINYGFGISLGWKGFDASLFMQGVGNVTRIIGGDALYGASDNIERLGQIYAD 929

Query: 930  LHLGRWTPETA-ATATYPRLSSSPNQSQHNYVDNDFFLIDASYLRLKSAELGFTLPTSWI 988
            +   RWT       ATYPRLS S  + ++N   + ++  + S+LRLK+ E+G+TLP    
Sbjct: 930  VAEKRWTTSNPNPNATYPRLSMS--KVENNLQPSTYWQRNMSFLRLKNVEIGYTLPKHIY 987

Query: 989  QKIGLTNARLYANCFNLYTWDKVNYLDPENRDVRAWYYPQQRIFNFGATVSF 1040
            +++G+++ R+YA   NL T+ K    DPE        YPQ R    G  ++F
Sbjct: 988  KRLGMSSIRVYAQGVNLLTFSKFKLWDPELDSNYGNIYPQMRTITLGLNLNF 1039