Pairwise Alignments

Query, 815 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 796 a.a., putative TonB-linked outer membrane receptor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 73.2 bits (178), Expect = 5e-17
 Identities = 115/458 (25%), Positives = 189/458 (41%), Gaps = 67/458 (14%)

Query: 6   VAFLAVWINIAFTFAQAQTSQSRIYGRVLDAEGKNI-EFATIALLKDSVLVKTTFTEKDG 64
           + FLA   +++  F+Q   S   I GRV+    K + +FAT+ L   +   +   T++ G
Sbjct: 7   LVFLAFLFSVS-AFSQHGRSGGMISGRVISTVEKEVVDFATVYLKGTN---RGATTDEKG 62

Query: 65  LFSFDQLAYGKYLIKISVVGSPVYQTDTLVLSANHAVIGLSDIKIKAVATNLKEVNISGQ 124
           L+   + A G Y + +S +G    +    + +     +   ++ I    T L EV +S  
Sbjct: 63  LYHL-KAAAGDYTLVVSAIGYTTVEKKVTLKAGERIRV---NVTIAPQVTELNEVVVSTS 118

Query: 125 KAFVERKIDRTVVNVDAL-ISNAGTTALDVLSKSPGVNVDQNGAI------SLKGKNG-- 175
                 K     V +DA  + N+     D L+K PG+ + + G +      SL G +G  
Sbjct: 119 AVSRVNKSAFNAVAIDAKGLHNSTQNLSDALAKVPGLKLREAGGVGSDMILSLDGFSGKH 178

Query: 176 VAIFIDDKPTYLSGSDLENYLRSLPSSSLDQIELMTNP-PAKYDAAGNGGVINIKTKKTK 234
           V +FID  P    GS     L ++P +  D+IE+     P  +     GGVINI T K +
Sbjct: 179 VKLFIDGVPQEGVGSSFG--LNNIPINFADRIEVYRGVVPVGFGTDALGGVINIVTNKNR 236

Query: 235 TAGFNGGINLSLNQGELSRSNNSFNF-----NYRKDKINVFGNLSYNLNNSFTDLDLNRK 289
              F   ++ S + G  +   +  NF     N    +IN F N  Y+ N+ + D  +   
Sbjct: 237 KNWF---LDASYSYGSFNTHKSYVNFGQTFKNGLTYEINAFQN--YSDNSYYVDTPVEEF 291

Query: 290 YKNADGSAKSYFNQNSYFRRHGNTFNL----KTGL-DYYASDRTTWGVVLTGMNRISKQV 344
           Y+   GSA +        R H N  N     K GL D   +DR   G+     +R+ K++
Sbjct: 292 YEGG-GSAINTDKVEHVKRFHDNYHNEAVVGKVGLVDKKWADRLMIGLT---YSRMYKEI 347

Query: 345 NNNTSNLSNASMQLDSIIRAENIDQIKYQNGG---VNLNYRHK-FKQAGRELTFDADY-L 399
                        +  ++  E     KY+ G     +L YR +       ++ F A+Y  
Sbjct: 348 QTGV---------VQKVVFGE-----KYRKGNSLMPSLEYRKRNLFVRNLDVAFTANYNR 393

Query: 400 LYRNQTDQTYYNFSYL--------PGGALKYQDILTGN 429
            + N  D   Y F++L          G   YQD+ + N
Sbjct: 394 NFTNNVDTATYRFNWLGEKTSLKGRKGEQSYQDMKSDN 431