Pairwise Alignments

Query, 584 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 598 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  114 bits (286), Expect = 9e-30
 Identities = 156/571 (27%), Positives = 242/571 (42%), Gaps = 102/571 (17%)

Query: 64  TDDTQSDNMETLPYDKVVAGEYLVPS---TGGGWS--WSYLRSVNYFLENYGKA------ 112
           +DD  S N+      K+  G Y   +   +   W   +S +R  N  + +          
Sbjct: 79  SDDAISINVSDPDVYKLAMGRYTASTRVESDMRWKEYYSGIRKANILINHIDVVPFMLTY 138

Query: 113 -NAAAEAKNHYVGV---ARLFRAWFYFDKVKRFGNVPWYSGTMNI-NDEAQLYKPQDPRT 167
            NA  E K   V +   AR  RA+FYF+ VKR+G VP     ++I  D+ ++  P++   
Sbjct: 139 KNAKGETKPLNVTMKAEARFLRAYFYFELVKRYGGVPLMGDDVHILGDDMEI--PRNTFE 196

Query: 168 LVMDSVLKDLDYASANIRTSKTPLW-----TINRYVALSLKSRICLFEGT---------- 212
             +  +  +LD    ++RT+  P +     T  R   L+LKSR+ L+  +          
Sbjct: 197 QCVQYICDELDDIKDDLRTNPMPDFEQYAHTPTREACLALKSRVLLYAASPLFNERPIEI 256

Query: 213 WRKYRGIA--DADRFLIAAKDAAKKVIDE------GGYSLY--TTGKPDVDYLNLF-AMS 261
             +  G A  D +R+  AAK AAK  IDE      G Y L   T+   + D+ ++F    
Sbjct: 257 GNELIGYASYDRERWNDAAK-AAKTFIDEYGPNGNGAYGLTQSTSDGDNRDFRDVFLGFY 315

Query: 262 DAPQNEVILAY----EYSTIL--NLRHAFSAESGAYGRGF-TKEMVNSYLMKDGTPFTSV 314
           +   N  ++ Y    E  +I   N    FS ++   GR   T+ +V+++ MKDG  F   
Sbjct: 316 NKTNNPEVIFYRPGGEDKSIESNNGPLGFSGDNLGKGRTLPTQNLVDAFPMKDGM-FAGQ 374

Query: 315 AGYATKTYMDEFENRDPRLIQTVLNPLYTRTDRT-DASKRFSPIPKIPGG-TPTGYLQVK 372
               T    + +ENRDPRL  T+L+   +  + T D S      P      + TGY   K
Sbjct: 375 GSKYTLNQSNPYENRDPRLDYTILHHGSSWLNNTLDISIGGVNNPSNSAEYSKTGYYMCK 434

Query: 373 FYQDDPIKEIYGQSDNDAPVIRYAEVLLNYAEAMAELGTITQADLDLTINKLRDRVGMTG 432
           F      +  YG   +   + RYAE+LLNYAEAM E  +    D+   I  LR R G+  
Sbjct: 435 FMGKFGEESQYGNKIHLWVMFRYAEMLLNYAEAMNEYLSSPSQDVYDAIIALRARAGIES 494

Query: 433 AAHLNMGVAIDPVLAAQYPDVSSALILEIRRERRVELAGEGFRYSDILRWKAGNLLAKKF 492
               +       +  A+  +V       I+ ERR+E+A E  RY DI RW+    +A++ 
Sbjct: 495 GNDESPYGLKKNMTQAEMREV-------IQNERRIEMAFEEQRYWDIRRWR----IAEEI 543

Query: 493 YGIYFPGLGEYDLTKDGKLDFAIVAAIPAVKTPGVTYAVINKDIYLSNGNSGNIVPYPNQ 552
           +     GL                     ++  G T +    D+                
Sbjct: 544 FKNPLEGL--------------------EIRVKGNTTSFNEVDV---------------- 567

Query: 553 TKTFNENKNYLFPIPTSELLLNKNLIQNPGW 583
             T  + K YL+PIP +E++ N N+IQNP W
Sbjct: 568 LSTTFDVKRYLYPIPYNEVVKNDNMIQNPKW 598