Pairwise Alignments

Query, 584 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 621 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  173 bits (438), Expect = 2e-47
 Identities = 187/645 (28%), Positives = 273/645 (42%), Gaps = 104/645 (16%)

Query: 12  VIILICFG----SCKKDFLDKLPITDIAPQTFFKNEKDLELYCNGLYSLVP-----GAGI 62
           +IIL  F     S   DFLD+ P+T     TF    + +E Y N LY  +P     G G+
Sbjct: 5   IIILTAFMGLMLSACSDFLDRKPLTQPDNTTFLSGREQVENYINALYPALPAPAQYGMGV 64

Query: 63  MTDDTQSDNMETLPYDKVVAGEYLVPSTGGGWSWSY--LRSVNYFLENYGKANAAAEAKN 120
             ++  SDN+    YD  + GE  + S    W   Y  LR VNYF   Y        A+ 
Sbjct: 65  RGEEVNSDNILAEKYDMRLNGENNLFSGSSDWKKGYENLRDVNYFFYYYCVPEIEETAEI 124

Query: 121 HYV-GVARLFRAWFYFDKVKRFGNVP----WYSGTMNINDEAQLYKPQDPRTLVMDSVLK 175
             + G A   RA+++F  + RFG++P    ++ G   +   A L  P   R+ V   +L 
Sbjct: 125 QSLRGEAYFLRAYWHFYLLTRFGDIPIMDDFWDGNATV---AGLQIPATKRSDVARFILS 181

Query: 176 DLDYASANIRTSKTPLWT--------INRYVALSLKSRICLFEGTWRKYRGIADADRFLI 227
           DL  A   +  ++  L++        IN+  A+ L  R+ L+EG+W KY    +  +   
Sbjct: 182 DLKAAIGELPETRASLFSRSKYQGLRINKEAAIILAMRVALYEGSWEKYHKGTEFAKEDN 241

Query: 228 AAKDAAKKVIDEGGYSLYTTG----KPDVD---------YLNLFAMSDAPQ-NEVILAYE 273
           +A +  ++V++ G   L+  G      D D         + +LF   D     E +   +
Sbjct: 242 SA-EFYQEVLNWGDQQLFPAGLTLNTKDSDKEAISAEDAFAHLFNKKDLSGIQEAVFWKK 300

Query: 274 YSTILNLRHAFSA--ESGAYGR----GFTKEMVNSYLMKDGTPFTSVAGYATKTYMDEFE 327
           YS    + +A      SG        G +K +V++YL  DGT F   A    K +   F+
Sbjct: 301 YSLNDGIFNALGGLLSSGVVNTDGPAGLSKSLVDNYLYTDGT-FIDPAELKFKDFNQMFK 359

Query: 328 NRDPRLIQTVLNP--LYTRTDRTDASKRFSPIPKIPGGTPTGYLQVKFYQDDPIKE---- 381
           +RD RL+ TV++    Y       ASK  +     P GT     ++K   DD +      
Sbjct: 360 DRDARLLATVMHTGCKYRSNAGATASKPMNVRAYDPTGTKE---EIKLKNDDIVSPSLNG 416

Query: 382 --------------------IYGQSDNDAPVIRYAEVLLNYAEAMAELGTITQADLDLTI 421
                               + G S+    + RYAE LL YAEA AEL          TI
Sbjct: 417 NGNSKNVTGFHIRMGIDTTYVDGNSETAIIMFRYAEGLLCYAEAAAELNKYDDNVAAKTI 476

Query: 422 NKLRDRVGMTGAAHLNMGVAIDPVLAAQYPDVS-SALILEIRRERRVELAGEGFRYSDIL 480
             LR+R G+           I P     +P    S +I EIRRERR ELA +GFR  D++
Sbjct: 477 KALRERAGVK---------YITPTTDPNFPFTGISPVIQEIRRERRSELALQGFRLDDLM 527

Query: 481 RWKAGNLLAKKFYGIYFPGLGEYDLTKDGKLDFAIVAAIPAVKTPG-VTYAVINKDIYLS 539
           RW     L     GI   G G Y L K+G L         +    G  +  ++ KD   +
Sbjct: 528 RWAGAGTLK----GIDGRGRGAY-LGKEGIL-------YRSFSPEGQESLKLVLKD---N 572

Query: 540 NGNSGNIVPYPNQTKTFNENKNYLFPIPTSELLLNKNLIQNPGWQ 584
            G    +  Y      F+  ++YL PIP  EL LN+ L QNPGW+
Sbjct: 573 EGWMDPLQQYLPNGYLFDLKRDYLLPIPQDELQLNRQLRQNPGWE 617