Pairwise Alignments

Query, 584 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  119 bits (299), Expect = 3e-31
 Identities = 157/646 (24%), Positives = 271/646 (41%), Gaps = 138/646 (21%)

Query: 2   LKNIGIYLSIVIILICFGSCKKDFLDKLPITDIAPQTFFKNEKDLELYCNGLY--SLVPG 59
           +K + +Y+   I+L+   +C    L+  P++  + + ++  E ++++  + LY     P 
Sbjct: 1   MKKLLLYIGAGILLL--SACHD--LNLNPLSSGSTENWYSTETEVQMAVDELYRYDFWPE 56

Query: 60  AGIM----TDDTQSDNMETLPYDKVVAGEYLVPSTGGGWSWSYLRSVNYFLENYGKA--- 112
            G      +DD  S ++ T   D  + G+    ++  G  +  +   N  +E   +A   
Sbjct: 57  DGQQQTDWSDDYTSRDLLTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKSHRAIEN 116

Query: 113 NAAAEAKNHYVGVARLFRAWFYFDKVKRFGNVPWYSGTMNINDEAQLYKPQDPRTLVMDS 172
            A+A   N  +  A+  RA  Y   + +FG++P      +++ E  L   +  +++V+  
Sbjct: 117 GASATTINRLIAEAKFHRAAAYAKLIVKFGDLPLV--LTDVSTEEGLTMGRTDKSIVLAQ 174

Query: 173 VLKDLDYASANIRTSKTPLWTINRYVALSLKSRICLFEGTWRKYRGIADADRFLIAAKDA 232
           + KD D A + + TS T      +  AL+LK+R+ L    W               A DA
Sbjct: 175 IYKDFDDAISVLPTSYTDQQRATQGAALALKARVALIMEDWE-------------TAADA 221

Query: 233 AKKVIDEGGYSLYTTGKPDVDYLNLFAMSDAPQNEVILAYEYSTILNLRHAFSAESGAYG 292
           AK V+D   Y L+       D+ NLF  +    NE I         ++       +G   
Sbjct: 222 AKAVMDLNIYELHP------DFGNLFLSTTKNSNEFIFKIPRDATYDIY--LGTGNGGVN 273

Query: 293 R----------GFTK-----EMVNSYLMKDGTPFTSVAGYATKTYMDEFENRDPRLIQTV 337
           +          G+T+     E++ ++   DG        +      + F NRDPRL +T+
Sbjct: 274 QVYNDLPRNVGGWTQTCPSWELLAAFTCTDGLLINESPLFDPH---EPFANRDPRLAETI 330

Query: 338 LNPLYTRTDRTDASKRFSPIPKI-------PGGTPTGY---LQVKFYQDDP------IKE 381
           +               ++P P+         G   T Y      ++   D       I E
Sbjct: 331 VP-----FGSNHLGYEYNPHPEALTCMNYNTGEIVTNYDTRANAQYASFDGLVWKKGIDE 385

Query: 382 IYGQS----DNDAPVIRYAEVLLNYAEAMAELGTITQADLDLTINKLRDRVGMTGAAHLN 437
            + Q+    D D    RYAE+LL YAEA  EL  I  + LD  +N++R R          
Sbjct: 386 TWLQNGFKVDQDIIYCRYAEILLTYAEAKIELNEIDNSVLD-ALNEVRARA--------- 435

Query: 438 MGVAIDPVLAAQYPDVSS----ALILEIRRERRVELAGEGFRYSDILRWK-AGNLLAKKF 492
               +D    A YP  +S     L  ++R ERR+E+A E  RY+DI+RWK A  ++ +K 
Sbjct: 436 --YGVDKSDKASYPAFTSNDQSTLRHQLRVERRMEMAKEHMRYTDIIRWKLAEKVMNRKT 493

Query: 493 YGIYFP---------GLGEY------DLTKDGKLDFAIVAAIPAVKTPGVTYAVINKDIY 537
           YGI +P           G++      ++ +DG  DF+       ++  G   A+      
Sbjct: 494 YGILYPASLCIERVTSQGDWFWAFTPEMDEDGCADFS------KLEEAGKCQAL------ 541

Query: 538 LSNGNSGNIVPYPNQTKTFNENKNYLFPIPTSELLLNKNLIQNPGW 583
                           +++N+ + YL+PIPT+EL +N+NL QNPG+
Sbjct: 542 --------------AVRSWND-RQYLWPIPTTELQINENLKQNPGY 572