Pairwise Alignments

Query, 584 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 579 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  166 bits (420), Expect = 2e-45
 Identities = 188/635 (29%), Positives = 283/635 (44%), Gaps = 111/635 (17%)

Query: 2   LKNIGIYLSIVIIL-ICFGSCKKDFLDKLPITDIAPQTFFKNEKDLELYCNGLYSLVPG- 59
           +K   I + + I+L + F SC    LD  P   +  +  + +  D + + N  YS     
Sbjct: 1   MKRSKITILLAIVLGMTFHSC----LDLEPQDQLGGKNMWTSVNDYKQFANTFYSWTRDF 56

Query: 60  AGIMTDDTQSDNMETL----PYDKVVAGEYLVPSTGGGWSWSY--LRSVNYFLENYGKAN 113
           + ++ D T SD    L     Y++   G   +PS+   ++ +Y  +R  N  L+N  +A 
Sbjct: 57  SSVVYDGTHSDKRSDLITYQSYNEFSRGINSIPSSDANYTDNYKHIRRTNLLLQN-AEAY 115

Query: 114 AAAEAKNHYVGVARLFRAWFYFDKVKRFGNVPWYSGTMNINDEAQLYKPQDPRTLVMDSV 173
           A  E    Y+G A  FRA+ YFD ++ +G+V      ++I D     K  D R+ V+D +
Sbjct: 116 AKPEDIKQYIGEAYFFRAYSYFDLLQLYGDVIITKKPLDITDPEMKVKRND-RSEVVDLI 174

Query: 174 LKDLDYASANIRTSKTPLWT-----INRYVALSLKSRICLFEGTWRKYRG-----IADAD 223
           + DL++A  N+   K  L T     I++  A +  SR+ L+EGTW+K R         A+
Sbjct: 175 IDDLNHAVENLPAFKE-LTTEEEGRISKEGAQAFLSRVALYEGTWQKSRNGNQNTQRSAN 233

Query: 224 RFLIAAKDAAKKVID-EGGYSLYTTGKP-------DVDYLNLFAMSDAPQN--------- 266
              IAAK AA+ VID + GY+    G         D     +F + +   N         
Sbjct: 234 LLDIAAK-AARTVIDAKYGYTFRLFGTDSETKILGDSAQKYMFILENEKSNPAGIKKSSN 292

Query: 267 -EVILAYEYSTIL-NLRHAFSAESGAYGRGFTKEMVNSYLMKDGTPFTSVAGYAT-KTYM 323
            E I A  +  +L ++    + E  A  +  T++  N YL  DG P      +      +
Sbjct: 293 HEYIFARRHDQVLASIGKNITQECLANVQWVTRKFANLYLCDDGLPIEKSGRFQKYDKKV 352

Query: 324 DEFENRDPRLIQTVLNP-------LYTRT----DRTD--ASKRFSPIPKIPGGTPTGYLQ 370
            EF NRD R+  T+L P        + RT    D TD   SK + P       + T Y  
Sbjct: 353 SEFLNRDNRMRYTLLKPGTRYWGNKFGRTSWQWDETDLKTSKVYDP------ASGTCYGN 406

Query: 371 VKFYQDDPIKEIYGQSDNDAPVIRYAEVLLNYAEAMAELGT-ITQADLDLTINKLRDRVG 429
            K+  +  + +   Q   D P+IRYAEVLLNYAEA+ E    I   DL++++N +R RV 
Sbjct: 407 QKWSAERVVPDT--QEGYDFPLIRYAEVLLNYAEAIYERDDKIENEDLNISLNLVRQRV- 463

Query: 430 MTGAAHLNMGVAIDPVLAAQYPDVSSALILEIRRERRVELAGEGFRYSDILRWK-AGNLL 488
                + NM    + +  A   D+ +    EIRRER VEL  EGFR  D+ RWK A N +
Sbjct: 464 -----NTNMPALTNELTQAHGLDMRT----EIRRERTVELFNEGFRIDDLKRWKTAENEM 514

Query: 489 AKKFYGIYFPGLGEYDLTKDGKLDFAIVAAIPAVKTPGVTYAVINKDIYLSNGNSGNIVP 548
            +   GI                           K  G  Y   N    L+  + G +V 
Sbjct: 515 PQTMLGI---------------------------KWKGTEYESWNTTFSLN--DEGCVVV 545

Query: 549 YPNQTKTFNENKNYLFPIPTSELLLNKNLIQNPGW 583
              +T     +KNYL+P+P+ +L LN  L QNPGW
Sbjct: 546 ---ETGRQWADKNYLYPLPSDQLQLNPTLGQNPGW 577