Pairwise Alignments

Query, 584 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 609 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  406 bits (1043), Expect = e-117
 Identities = 261/612 (42%), Positives = 353/612 (57%), Gaps = 50/612 (8%)

Query: 7   IYLSIVIILICFGSCKKDFLDKLPITDIAPQTFFKNEKDLELYCNGLYSLVPGAGIMTDD 66
           +  ++ + L+C   C  D LD LP   ++ + +F+   DLEL+ N LY+ +       D 
Sbjct: 7   LVFTVAVTLMC--GCNDD-LDLLPKDRMSSEEYFRTASDLELFTNPLYNNILPKVQYKDQ 63

Query: 67  TQSDNMETLPYDKVVAGEY-LVPSTGGGWSWSYLRSVNYFLENYGKANAAAEAKNHYVGV 125
           +     ++L  ++++ G Y  VP++GGGWSW+ LR +N  L N  K   + +A   Y  V
Sbjct: 64  SDIYVCQSLS-NELMGGSYRTVPASGGGWSWTDLRRINTLLGNIDKCEDS-DAAEKYSAV 121

Query: 126 ARLFRAWFYFDKVKRFGNVPWYSGTMNINDEAQLYKPQDPRTLVMDSVLKDLDYASANIR 185
           AR FRA+FY DK++RFG+VPWY   ++  D  +LYKP+D R LVM  +L+DLD+A  ++ 
Sbjct: 122 ARFFRAYFYADKIERFGDVPWYDTELSDTDP-ELYKPRDSRELVMQKMLEDLDFAIEHLP 180

Query: 186 TSKTPL---WTINRYVALSLKSRICLFEGTWRKYRGIA----DADRFLIAAKDAAKKVID 238
           +        + + +  AL+ KSR+CLFEGT+RKY  +     DAD +L  + DAA K+ID
Sbjct: 181 SRNNEAEAPYKVTKGAALAFKSRVCLFEGTYRKYHNLRIEGHDADYYLAQSADAAGKLID 240

Query: 239 EGGYSLYTTGKPDVDYLNLFAMSDAPQNEVILAYEYS-TILNLRHAFSAES--GAYGR-G 294
            G YSLY+TG P  DY  LFA  DA  NE ILA  Y   I N  H  +A       GR G
Sbjct: 241 SGEYSLYSTGSPSTDYNILFAEDDANPNEYILAISYRYAIFNNSHGSNAHMLLSNQGRPG 300

Query: 295 FTKEMVNSYLMKDGTPFTSVAGYATKTYMDEFENRDPRLIQTVLNPLYTRTDRTDASKRF 354
           +T++MV  YL  DGT FT   G+ T  + +E  NRDPRL Q++  P YTR  + +     
Sbjct: 301 YTRKMVCMYLNSDGTRFTDRPGWETMGFNEETVNRDPRLAQSIRTPGYTRIGKKEILA-- 358

Query: 355 SPIPKIPGGTPTGYLQVKFYQDDPIK----EIYGQSDNDAPVIRYAEVLLNYAEAMAELG 410
              P + G   TGY  +KF QD        +    S ND PVIRYAEVLLNYAEA AELG
Sbjct: 359 ---PDL-GVAITGYQPIKFVQDPTAAGGNTDRASYSVNDLPVIRYAEVLLNYAEAKAELG 414

Query: 411 TITQADLDLTINKLRDRVGMTGAAHLNMGVAI-DPVLA---AQYPDVSSA---LILEIRR 463
           T+TQ+DLD ++N LR RVGM G   + M  AI DP L      +P+V+ A   +ILEIRR
Sbjct: 415 TLTQSDLDRSVNLLRGRVGMLG-IDMGMSNAIPDPYLCDPKTGFPNVNGANKGVILEIRR 473

Query: 464 ERRVELAGEGFRYSDILRWKAGNLL-------AKKFYGIYFPGLGEYDLTKDGKLDFAIV 516
           ER VEL  EGFR+SD++RWKAG  +          F G+Y  G GEYDL+ DGK+D  ++
Sbjct: 474 ERTVELVQEGFRWSDLMRWKAGYAINDSDDKSFSPFMGMYIAGAGEYDLSGDGKVD--VI 531

Query: 517 AAIPAVKTP----GVTYAVINKDIYLSNGNSGNIVPYPNQTK-TFNENKNYLFPIPTSEL 571
                   P    GV    + KDI LSN + G I  + +  +  FNE ++YL+PIP  E 
Sbjct: 532 FYNQGTPKPNAGVGVQVYALGKDILLSNNDHGYIYYHRSVPRVNFNEQRDYLYPIPIHER 591

Query: 572 LLNKNLIQNPGW 583
            LN +L QNPGW
Sbjct: 592 SLNNSLTQNPGW 603