Pairwise Alignments

Query, 1192 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1051 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  419 bits (1076), Expect = e-121
 Identities = 333/1083 (30%), Positives = 512/1083 (47%), Gaps = 119/1083 (10%)

Query: 156  IEGKIVDSKGAPLPGASVKVKGTTKATTANTEGKFSLVADKNDVLLISFVGYKTKEVPLN 215
            + G + D  G PLPG SV VKGTT  TT + +G++S+ A     L  S++G   +E+ +N
Sbjct: 38   VRGVVTDVTGDPLPGVSVVVKGTTTGTTTDIDGRYSINASNTATLEFSYIGMNKQEIKVN 97

Query: 216  GQSTLTIQLEESAAELSDFVVVGYGSTKKVNLTGAVSTVSGDVLKDRPISNIAQGLQGVI 275
            G+ST+ I L+E  A L + VVVGYG+ KK +LTG+V+TVS   +     SN++Q L G +
Sbjct: 98   GRSTINIILKEDVANLDEVVVVGYGTQKKAHLTGSVATVSQKDMLKTTASNMSQTLVGKL 157

Query: 276  PNLTITNFSGQPGRTS-DLNIRGYESING-GSPLIVIDGVPTTSNSSLYSLNPQDVENIT 333
            P L      GQPG     + IRGY S +G G+ L+++DGV      ++  ++P DVE++T
Sbjct: 158  PGLITQQSLGQPGSDDVSILIRGYSSFSGSGTVLVLVDGV----ERAMGQVDPNDVESVT 213

Query: 334  VLKDAASAAIYGGRATFGVILITTKSGKFNSGLNIEFSSNFSDKRLTELPNIVTDPATVM 393
            +LKDAAS A+YG +A  GV+L+TTK G+     +I +  + +    T LP ++     + 
Sbjct: 214  ILKDAASCAVYGMKAANGVVLVTTKHGQ-EGKTDITYRGSMTLSHATTLPKMMNGTQYMQ 272

Query: 394  ------RVKNEGYKAYYGTDLYNQTFMDYANKRSADPSLPPYYIDPADPTKYVYVGSTNW 447
                  ++ N G    Y TD               +     Y  DP D  +     +T+W
Sbjct: 273  WYNLARKLDNNGVDNPYFTD---------------EEIAATYNGDPTDGFE-----NTDW 312

Query: 448  FDELFRKNTPTWDNNLSIRGGTEKVTYNVSAGYLRQEGLFEGNPDVYSRYSLRSKTEFKA 507
              +L+ K T    +NLSI GG+ KV Y +S GYL Q+G+ +GN +   R + RS  + +A
Sbjct: 313  TSDLY-KTTLMHQHNLSINGGSNKVRYFISGGYLHQDGIIKGNKN--ERSNFRSNIDVQA 369

Query: 508  TSWLKLG-NTTQLSRT-----GYKYPTLWNGPSRGDLFHAIGRIPSFEIVNNPNGSY--- 558
            T  +K+  NT  L +      GY Y           L ++I  +P  E    P  +Y   
Sbjct: 370  TKDIKVSLNTAALIKDYYQPGGYSYGNQQAYSIFHQLLYSIPFVPK-EYEGYPTSAYRGA 428

Query: 559  -TANGVLLGYLKDGG------RGESQKN-DYLTTF--EAQTNFF-----KNSLRVTTNYT 603
             +A   + G    G       R ES  N +Y   F    + N F     ++    T  Y 
Sbjct: 429  TSAANPIYGSANSGFQESRRVRIESSANVEYTAPFLKGLKANMFISWDWQDLASKTFAYA 488

Query: 604  FQSVNGNFLDPYIPLEYQYANPNVNIQDGQSGLGQGYNTSKYNVFNVFGEYEKNFGKHNV 663
            + SVN           Y Y      + DG   L QG   S+  +      Y   FG H+V
Sbjct: 489  Y-SVNAYDSSTK---SYSYVQSANLLADGN--LYQGDQKSQQVILRPTISYNNKFGLHDV 542

Query: 664  KAMAGYSQEGYHEDSNSIFRNDLISSNTPNIGLALGNPSYTS-TAGEWALRSQFFRVNYA 722
             A+  Y Q      + +  R D    + P I L     +  S ++G+ A  +   R+NYA
Sbjct: 543  GALFLYEQTQVKSSALNASRTDYDLFDLPEISLGDAQTATNSGSSGKSAYAAYVGRLNYA 602

Query: 723  YDNKYLLEVNGRRDGSSRFPVDDRYVFLPSGSIGWRVSEENFFKGLKPAISDFKLRFSYG 782
            Y NKYL E + R DGS +F    R+ F PS S+GW +SEE+FFK   P I  FKLR S+G
Sbjct: 603  YANKYLAEASFRYDGSYKFAKGHRWGFFPSVSLGWVMSEEDFFKDALPKIDYFKLRGSFG 662

Query: 783  SLGNQTVSKAGSSDPDYYPYIPLMSSSSKITNILGGNQPPAVYAPGLVSPSLTWERQYTK 842
             LG+  VS         Y    ++  S+  T    G     V  P   +  LTWE+  + 
Sbjct: 663  ILGSDNVSAFLYRKSYSYTNNGVVFGSTPNTQ---GTLSNTVAYP---NERLTWEKTKSY 716

Query: 843  NWGTDIALMGNKLNISYDYYIRDVKDMLTSSRQL--PAVLGTPPPRTNAADLRTRGWELS 900
            N G D++     L + +D + +   D+L S   +  P++ G  P   N      RG+E++
Sbjct: 717  NLGFDLSAWNGLLGVEFDVFYKYTYDILQSVSNIYPPSLGGHYPSSENTGTFDNRGFEIA 776

Query: 901  LNYNNKFNLASSDFKYNFRFVLADNYTVITKFDNPNGNIGEYYVGKRIGEIWGMETEGLF 960
            L + N+    S     N  +    +  ++++    N    +  +G  +GE+WG++  GL+
Sbjct: 777  LKHRNRIGEFSYSLNGNLSYA---HNRILSRTQADNTLPWQSVLGSSVGELWGLKALGLY 833

Query: 961  QSDAEVAAHADQSAVDGYYGFHAGDPKYRDLNGDGKINIGKLTLGDHGDLKVIGNREARY 1020
            QS+ E+A     S    +     GD KY D+NGDGKI+        +  +K+        
Sbjct: 834  QSEEEIA----NSPQVSWNTPRVGDIKYADINGDGKID-------SNDRIKISRGIRPEM 882

Query: 1021 TYGISGGFNWKGFDMSFFLQGVAKRDFWLGTSSYFW-------------GTYRAPWEHVY 1067
             + +    N+KGFD+S   QG A  D  L    Y W               + A W++  
Sbjct: 883  MFALMADANYKGFDLSVQFQGAALCDKML---QYSWQDLNGATDMTPMTRPWYANWDNAP 939

Query: 1068 QHQLDNMWSPENPDAYFPRYAAWRTGDIAEWRDLDVVQTRYLQDASYLRLKNLTIGYRLP 1127
             + ++N W P++ +A +PR            +  D     + ++ +YLRLKN+T+GY LP
Sbjct: 940  LYLVENSWRPDHTNAEYPRLTVSSVSHSNNAQQSDF----WKRNGAYLRLKNVTLGYTLP 995

Query: 1128 EKLVKRIGLKSFRFYLSGENIGEINNIKFKVLDPETLGGDGSSSWGTGKSYPFQRSYSAG 1187
            +    ++GL + R Y +G N+  +    FK +DPE      S++  TG  YP QR++S G
Sbjct: 996  KAWTNKMGLSNIRVYANGTNL--LTFTDFKYIDPE------STNVATG-YYPQQRTFSFG 1046

Query: 1188 INV 1190
            I+V
Sbjct: 1047 IDV 1049